measurement_datetime

Sus OP Measurement

Source column CDSActivityDate. Converts text to dates.

• CDSActivityDate Start date of the episode, if exists, else the start date of the spell. CDS ACTIVITY DATE

select
    distinct
        d.DiagnosisICD,
        op.GeneratedRecordIdentifier,
        op.NHSNumber,
        op.CDSActivityDate
from omop_staging.sus_OP_ICDDiagnosis d
    inner join omop_staging.sus_OP op
        on d.MessageId = op.MessageId
where op.NHSNumber is not null
	and AttendedorDidNotAttend in ('5','6')
	

Comment or raise an issue for this mapping.

Sus CCMDS Measurement - Gestation Length at Delivery

Source columns MeasurementDate, MeasurementDateTime. Combines a date with a time of day.

• MeasurementDate Start date of the Measurement CRITICAL CARE START DATE

• MeasurementDateTime Start time of the Measurement, if exists, else midnight. CRITICAL CARE START TIME

		select distinct
				apc.NHSNumber,
				apc.GeneratedRecordIdentifier,
				cc.CriticalCareStartDate as MeasurementDate,
				coalesce(cc.CriticalCareStartTime, '00:00:00') as MeasurementDateTime,
				cc.GestationLengthAtDelivery as ValueAsNumber
		from omop_staging.sus_CCMDS cc 
		inner join omop_staging.sus_APC apc on cc.GeneratedRecordID = apc.GeneratedRecordIdentifier
		where apc.NHSNumber is not null
		and cc.GestationLengthAtDelivery is not null
	

Comment or raise an issue for this mapping.

Sus CCMDS Measurement - Person Weight

Source columns MeasurementDate, MeasurementDateTime. Combines a date with a time of day.

• MeasurementDate Start date of the Measurement CRITICAL CARE START DATE

• MeasurementDateTime Start time of the Measurement, if exists, else midnight. CRITICAL CARE START TIME

		select distinct
				apc.NHSNumber,
				apc.GeneratedRecordIdentifier,
				cc.CriticalCareStartDate as MeasurementDate,
				coalesce(cc.CriticalCareStartTime, '00:00:00') as MeasurementDateTime,
				cc.PersonWeight as ValueAsNumber
		from omop_staging.sus_CCMDS cc 
		inner join omop_staging.sus_APC apc on cc.GeneratedRecordID = apc.GeneratedRecordIdentifier
		where apc.NHSNumber is not null
		and cc.PersonWeight is not null
	

Comment or raise an issue for this mapping.

Sus APC Measurement

Source column CDSActivityDate. Converts text to dates.

• CDSActivityDate Start date of the episode, if exists, else the start date of the spell. CDS ACTIVITY DATE

select
    distinct
        d.DiagnosisICD,
        apc.GeneratedRecordIdentifier,
        apc.NHSNumber,
        apc.CDSActivityDate
from omop_staging.sus_ICDDiagnosis d
    inner join omop_staging.sus_APC apc
        on d.MessageId = apc.MessageId
where apc.NHSNumber is not null
order by
	d.DiagnosisICD,
    apc.GeneratedRecordIdentifier,
    apc.NHSNumber,
    apc.CDSActivityDate
	

Comment or raise an issue for this mapping.

SACT Measurement Weight at Start of Regimen

Source column Start_Date_Of_Regimen. Converts text to dates.

• Start_Date_Of_Regimen Date the Regiment started START DATE OF REGIMEN

		select distinct 
			NHS_Number,
			Weight_At_Start_Of_Regimen,
			Start_Date_Of_Regimen
		from omop_staging.sact_staging
	

Comment or raise an issue for this mapping.

SACT Measurement Weight at Start of Cycle

Source column Start_Date_Of_Cycle. Converts text to dates.

• Start_Date_Of_Cycle Date the Cycle started START DATE OF CYCLE

		select distinct 
			NHS_Number,
			Weight_At_Start_Of_Cycle,
			Start_Date_Of_Cycle
		from omop_staging.sact_staging
	

Comment or raise an issue for this mapping.

SACT Measurement Height

Source column Start_Date_Of_Regimen. Converts text to dates.

• Start_Date_Of_Regimen Date the Regiment started START DATE OF REGIMEN

		select distinct 
			NHS_Number,
			Height_At_Start_Of_Regimen,
			Start_Date_Of_Regimen
		from omop_staging.sact_staging
	

Comment or raise an issue for this mapping.

Oxford Lab Measurement

Source column EVENT_START_DT_TM. Converts text to dates.

• EVENT_START_DT_TM Lab test event start datetime

select
	NHS_NUMBER,
	EVENT,
	EVENT_START_DT_TM,
	RESULT_VALUE,
	RESULT_UNITS,
	NORMAL_LOW,
	NORMAL_HIGH
from ##duckdb_source##
where lower(EVENT) not like '%comment%'
	

Comment or raise an issue for this mapping.

COSD V9 UR Measurement Tumour Laterality

Source column MeasurementDate. Converts text to dates.

• MeasurementDate DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Tumour Laterality for UR cancer area from COSD v9.
-- Identifies the side of the body for a tumour relating to paired organs.
-- Only valid laterality codes (L, R, M, B) are included.
-- MeasurementDate uses the primary diagnosis date.
-- TumourLaterality will be mapped to a measurement value concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as MeasurementDate,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
from omop_staging.cosd_staging_901
where type = 'UR'
  and (Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.TumourLaterality.@code') in ('L','R','M','B');
	

Comment or raise an issue for this mapping.

COSD V9 UR Measurement TNM Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

-- Query to extract TNM Stage Grouping (Integrated) for UR cancer area from COSD v9.
-- The TNM stage grouping classifies the combination of T, N and M into stage groupings after treatment.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- TnmStageGroupingIntegrated will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingIntegrated' as TnmStageGroupingIntegrated
from omop_staging.cosd_staging_901
where type = 'UR'
  and TnmStageGroupingIntegrated is not null;
	

Comment or raise an issue for this mapping.

COSD V9 UR Measurement TNM Category Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

-- Query to extract TNM Stage Grouping (Final Pretreatment) for UR cancer area from COSD v9.
-- The TNM stage grouping classifies the combination of T, N and M into stage groupings before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- TnmStageGroupingFinalPretreatment will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingFinalPretreatment' as TnmStageGroupingFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'UR'
  and TnmStageGroupingFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 UR Measurement Tcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

-- Query to extract T Category (Integrated Stage) for UR cancer area from COSD v9.
-- The T category classifies the size and extent of the primary tumour after treatment and/or after all available evidence has been collected.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- TcategoryIntegratedStage will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryIntegratedStage' as TcategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'UR'
  and TcategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 UR Measurement Tcategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

-- Query to extract T Category (Final Pretreatment) for UR cancer area from COSD v9.
-- The T category classifies the size and extent of the primary tumour before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- TcategoryFinalPreTreatment will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryFinalPretreatment' as TcategoryFinalPreTreatment
from omop_staging.cosd_staging_901
where type = 'UR'
  and TcategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 UR Measurement Prostate Specific Antigen Diagnosis

Source column MeasurementDate. Converts text to dates.

• MeasurementDate DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Prostate Specific Antigen (Diagnosis) for UR cancer area from COSD v9.
-- PSA is a numeric lab measurement in ng/ml at the time of prostate cancer diagnosis.
-- MeasurementDate uses the primary diagnosis date.
-- PsaDiagnosis is a numeric value that will be stored as value_as_number in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as MeasurementDate,
    Record ->> '$.PrimaryPathway.Diagnosis.DiagnosisProstate.PsaDiagnosis.@value' as ProstateSpecificAntigenDiagnosis
from omop_staging.cosd_staging_901
where type = 'UR'
  and ProstateSpecificAntigenDiagnosis is not null;
	

Comment or raise an issue for this mapping.

COSD V9 UR Measurement Primary Pathway Metastatic Site

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Metastatic Site (Primary Pathway/Diagnosis) for UR cancer area from COSD v9.
-- MetastaticSite is a repeating field so unnest is used to normalise each site into its own row.
-- Code 97 (Not Applicable - Disease not spread) is excluded.
-- MetastaticSite will be mapped to a measurement value concept in OMOP in a later step.
with UR as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis.MetastaticSite.@code' ],
                Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'UR'
)
select distinct
    NhsNumber,
    DateOfPrimaryDiagnosisClinicallyAgreed,
    MetastaticSite
from UR
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 UR Measurement Non Primary Pathway Recurrence Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Metastatic Site (Non-Primary Pathway - Recurrence) for UR cancer area from COSD v9.
-- MetastaticSite is a repeating field so unnest is used to normalise each site into its own row.
-- Code 97 (Not Applicable - Disease not spread) is excluded.
-- MetastaticSite will be mapped to a measurement value concept in OMOP in a later step.
with UR as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence.MetastaticSite.@code' ],
                Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'UR'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from UR
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 UR Measurement Non Primary Pathway Progression Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Metastatic Site (Non-Primary Pathway - Progression) for UR cancer area from COSD v9.
-- MetastaticSite is a repeating field so unnest is used to normalise each site into its own row.
-- Code 97 (Not Applicable - Disease not spread) is excluded.
-- MetastaticSite will be mapped to a measurement value concept in OMOP in a later step.
with UR as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression.MetastaticSite.@code' ],
                Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'UR'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from UR
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 UR Measurement Ncategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

-- Query to extract N Category (Integrated Stage) for UR cancer area from COSD v9.
-- The N category classifies the absence or presence and extent of regional lymph node metastases after treatment.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- NcategoryIntegratedStage will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryIntegratedStage' as NcategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'UR'
  and NcategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 UR Measurement Ncategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

-- Query to extract N Category (Final Pretreatment) for UR cancer area from COSD v9.
-- The N category classifies the absence or presence and extent of regional lymph node metastases before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- NcategoryFinalPreTreatment will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryFinalPretreatment' as NcategoryFinalPreTreatment
from omop_staging.cosd_staging_901
where type = 'UR'
  and NcategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 UR Measurement Mcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

-- Query to extract M Category (Integrated Stage) for UR cancer area from COSD v9.
-- The M category classifies the absence or presence of distant metastases after treatment.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- McategoryIntegratedStage will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.MCategoryIntegratedStage' as McategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'UR'
  and McategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 UR Measurement Mcategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

-- Query to extract M Category (Final Pretreatment) for UR cancer area from COSD v9.
-- The M category classifies the absence or presence of distant metastases before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- McategoryFinalPreTreatment will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.MCategoryFinalPretreatment' as McategoryFinalPreTreatment
from omop_staging.cosd_staging_901
where type = 'UR'
  and McategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 UR Measurement Grade Of Differentiation

Source column MeasurementDate. Converts text to dates.

• MeasurementDate DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Grade of Differentiation (at Diagnosis) for UR cancer area from COSD v9.
-- The grade classifies the differentiation of the tumour at the time of diagnosis.
-- MeasurementDate uses the primary diagnosis date.
-- GradeOfDifferentiationAtDiagnosis will be mapped to a measurement value concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as MeasurementDate,
    Record ->> '$.PrimaryPathway.Diagnosis.GradeOfDifferentiationAtDiagnosis.@code' as GradeOfDifferentiationAtDiagnosis
from omop_staging.cosd_staging_901
where type = 'UR'
  and GradeOfDifferentiationAtDiagnosis is not null;
	

Comment or raise an issue for this mapping.

COSD V9 UR Measurement Adult Comorbidity Evaluation

• Value copied from MeasurementDate

• MeasurementDate Measurement date is the earliest available date from clinical events. DATE FIRST SEEN, DATE FIRST SEEN (CANCER SPECIALIST), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT), TNM STAGE GROUPING DATE (INTEGRATED)

-- Query to extract Adult Comorbidity Evaluation - 27 Score for UR cancer area from COSD v9.
-- The ACE-27 score measures comorbidity severity during a cancer care spell.
-- MeasurementDate uses the earliest available date from various clinical events.
-- AdultComorbidityEvaluation will be mapped to a measurement value concept in OMOP in a later step.
with UR as (
	select
		Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
		Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeenCancerSpecialist' as DateFirstSeenCancerSpecialist,
		Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
		Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage' as StageDateFinalPretreatmentStage,
		Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage' as StageDateIntegratedStage,
		Record ->> '$."CancerCarePlan"."AdultComorbidityEvaluation-27Score"."@code"' as AdultComorbidityEvaluation,
		Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber
	from omop_staging.cosd_staging_901
	where type = 'UR'
)
select distinct
	NhsNumber,
	AdultComorbidityEvaluation,
	least(
		cast(DateFirstSeen as date),
		cast(DateFirstSeenCancerSpecialist as date),
		cast(DateOfPrimaryDiagnosisClinicallyAgreed as date),
		cast(StageDateFinalPretreatmentStage as date),
		cast(nullif(StageDateIntegratedStage, '') as date)
	) as MeasurementDate
from UR
where AdultComorbidityEvaluation is not null
  and not (
		DateFirstSeen is null and
		DateFirstSeenCancerSpecialist is null and
		DateOfPrimaryDiagnosisClinicallyAgreed is null and
		StageDateFinalPretreatmentStage is null and
		StageDateIntegratedStage is null
    );
	

Comment or raise an issue for this mapping.

COSD V8 UR Measurement Tumour Laterality

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Tumour Laterality for UR cancer area from COSD v8.
-- Identifies the side of the body for a tumour relating to paired organs.
-- Only valid laterality codes (L, R, M, B) are included.
-- MeasurementDate uses diagnosis date, falling back to non-primary diagnosis date.
-- TumourLaterality will be mapped to a measurement value concept in OMOP in a later step.
select distinct
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis',
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
from omop_staging.cosd_staging_81
where type = 'UR'
  and (Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkageDiagnosticDetails.TumourLaterality.@code') in ('L','R','M','B');
	

Comment or raise an issue for this mapping.

COSD V8 UR Measurement TNMcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

-- Query to extract TNM Stage Grouping (Integrated) for UR cancer area from COSD v8.
-- The TNM stage grouping classifies the combination of T, N and M into stage groupings after treatment.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- TnmStageGroupingIntegrated will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreStaging.IntegratedStageTNMStageGroupingDate',
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis'
    ) as MeasurementDate,
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreStaging.IntegratedStageTNMStageGrouping' as TnmStageGroupingIntegrated
from omop_staging.cosd_staging_81
where type = 'UR'
  and TnmStageGroupingIntegrated is not null;
	

Comment or raise an issue for this mapping.

COSD V8 UR Measurement TNMcategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

-- Query to extract TNM Stage Grouping (Final Pretreatment) for UR cancer area from COSD v8.
-- The TNM stage grouping classifies the combination of T, N and M into stage groupings before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- TnmStageGroupingFinalPreTreatment will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreStaging.FinalPreTreatmentTNMStageGroupingDate',
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis'
    ) as MeasurementDate,
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreStaging.FinalPreTreatmentTNMStageGrouping' as TnmStageGroupingFinalPreTreatment
from omop_staging.cosd_staging_81
where type = 'UR'
  and TnmStageGroupingFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V8 UR Measurement Tcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

-- Query to extract T Category (Integrated Stage) for UR cancer area from COSD v8.
-- The T category classifies the size and extent of the primary tumour after treatment and/or after all available evidence has been collected.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- TcategoryIntegratedStage will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreStaging.IntegratedStageTNMStageGroupingDate',
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis'
    ) as MeasurementDate,
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreStaging.IntegratedStageTCategory' as TcategoryIntegratedStage
from omop_staging.cosd_staging_81
where type = 'UR'
  and TcategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V8 UR Measurement Tcategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

-- Query to extract T Category (Final Pretreatment) for UR cancer area from COSD v8.
-- The T category classifies the size and extent of the primary tumour before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- TcategoryFinalPreTreatment will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreStaging.FinalPreTreatmentTNMStageGroupingDate',
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis'
    ) as MeasurementDate,
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreStaging.FinalPreTreatmentTCategory' as TcategoryFinalPreTreatment
from omop_staging.cosd_staging_81
where type = 'UR'
  and TcategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V8 UR Measurement Prostate Specific Antigen Diagnosis

Source column MeasurementDate. Converts text to dates.

• MeasurementDate DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Prostate Specific Antigen (Diagnosis) for UR cancer area from COSD v8.
-- PSA is a numeric lab measurement in ng/ml at the time of prostate cancer diagnosis.
-- MeasurementDate uses the diagnosis date.
-- ProstateSpecificAntigenDiagnosis is a numeric value that will be stored as value_as_number in OMOP in a later step.
select distinct
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as MeasurementDate,
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreCancerCarePlan.UrologicalCancerCarePlan.ProstateSpecificAntigenDiagnosis.@value' as ProstateSpecificAntigenDiagnosis
from omop_staging.cosd_staging_81
where type = 'UR'
  and ProstateSpecificAntigenDiagnosis is not null;
	

Comment or raise an issue for this mapping.

COSD V8 UR Measurement Primary Pathway Metastatic Site

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Metastatic Site (Primary Pathway/Diagnosis) for UR cancer area from COSD v8.
-- MetastaticSite is a repeating field so unnest is used to normalise each site into its own row.
-- Code 97 (Not Applicable - Disease not spread) is excluded.
-- MetastaticSite will be mapped to a measurement value concept in OMOP in a later step.
with ur as (
    select distinct
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        unnest(
            [
                [ Record ->> '$.Urological.UrologicalCore.UrologicalCoreDiagnosis.MetastaticSite.@code' ],
                Record ->> '$.Urological.UrologicalCore.UrologicalCoreDiagnosis.MetastaticSite[*].@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_81
    where type = 'UR'
)
select distinct
    NhsNumber,
    ClinicalDateCancerDiagnosis,
    MetastaticSite
from ur
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V8 UR Measurement Non Primary Pathway Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Metastatic Site (Non-Primary Pathway) for UR cancer area from COSD v8.
-- MetastaticSite is a repeating field so unnest is used to normalise each site into its own row.
-- Code 97 (Not Applicable - Disease not spread) is excluded.
-- MetastaticSite will be mapped to a measurement value concept in OMOP in a later step.
with ur as (
    select distinct
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.Urological.UrologicalCore.UrologicalCoreNonPrimaryCancerPathwayRoute.MetastaticSite.@code' ],
                Record ->> '$.Urological.UrologicalCore.UrologicalCoreNonPrimaryCancerPathwayRoute.MetastaticSite[*].@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_81
    where type = 'UR'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from ur
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V8 UR Measurement Ncategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

-- Query to extract N Category (Integrated Stage) for UR cancer area from COSD v8.
-- The N category classifies the absence or presence and extent of regional lymph node metastases after treatment.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- NcategoryIntegratedStage will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreStaging.IntegratedStageTNMStageGroupingDate',
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis'
    ) as MeasurementDate,
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreStaging.IntegratedStageNCategory' as NcategoryIntegratedStage
from omop_staging.cosd_staging_81
where type = 'UR'
  and NcategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V8 UR Measurement Ncategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

-- Query to extract N Category (Final Pretreatment) for UR cancer area from COSD v8.
-- The N category classifies the absence or presence and extent of regional lymph node metastases before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- NcategoryFinalPreTreatment will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreStaging.FinalPreTreatmentTNMStageGroupingDate',
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis'
    ) as MeasurementDate,
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreStaging.FinalPreTreatmentNCategory' as NcategoryFinalPreTreatment
from omop_staging.cosd_staging_81
where type = 'UR'
  and NcategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V8 UR Measurement Mcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

-- Query to extract M Category (Integrated Stage) for UR cancer area from COSD v8.
-- The M category classifies the absence or presence of distant metastases after treatment.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- McategoryIntegratedStage will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreStaging.IntegratedStageTNMStageGroupingDate',
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis'
    ) as MeasurementDate,
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreStaging.IntegratedStageMCategory' as McategoryIntegratedStage
from omop_staging.cosd_staging_81
where type = 'UR'
  and McategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V8 UR Measurement Mcategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

-- Query to extract M Category (Final Pretreatment) for UR cancer area from COSD v8.
-- The M category classifies the absence or presence of distant metastases before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- McategoryFinalPreTreatment will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreStaging.FinalPreTreatmentTNMStageGroupingDate',
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis'
    ) as MeasurementDate,
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreStaging.FinalPreTreatmentMCategory' as McategoryFinalPreTreatment
from omop_staging.cosd_staging_81
where type = 'UR'
  and McategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V8 UR Measurement Grade Of Differentiation

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Grade of Differentiation (at Diagnosis) for UR cancer area from COSD v8.
-- The grade classifies the differentiation of the tumour at the time of diagnosis.
-- MeasurementDate uses diagnosis date, falling back to non-primary diagnosis date.
-- GradeOfDifferentiation will be mapped to a measurement value concept in OMOP in a later step.
select distinct
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis',
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.Urological.UrologicalCore.UrologicalCoreDiagnosis.DiagnosisGradeOfDifferentiation.@code' as GradeOfDifferentiationAtDiagnosis
from omop_staging.cosd_staging_81
where type = 'UR'
  and GradeOfDifferentiationAtDiagnosis is not null;
	

Comment or raise an issue for this mapping.

COSD V9 UG Measurement Tnm Stage Grouping Integrated

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingIntegrated' as TnmStageGroupingIntegrated
from omop_staging.cosd_staging_901
where type = 'UG'
  and TnmStageGroupingIntegrated is not null;
	

Comment or raise an issue for this mapping.

COSD V9 UG Measurement Tnm Stage Grouping Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingFinalPretreatment' as TnmStageGroupingFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'UG'
  and TnmStageGroupingFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 UG Measurement T Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryIntegratedStage' as TCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'UG'
  and TCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 UG Measurement T Category Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryFinalPretreatment' as TCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'UG'
  and TCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 UG Measurement Primary Pathway Metastatic Site

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with ug as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis.MetastaticSite.@code' ],
                Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'UG'
)
select distinct
    NhsNumber,
    DateOfPrimaryDiagnosisClinicallyAgreed,
    MetastaticSite
from ug
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 UG Measurement Non Primary Pathway Recurrence Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with ug as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence.MetastaticSite.@code' ],
                Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'UG'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from ug
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 UG Measurement Non Primary Pathway Progression Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with ug as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression.MetastaticSite.@code' ],
                Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'UG'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from ug
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 UG Measurement N Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryIntegratedStage' as NCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'UG'
  and NCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 UG Measurement N Category Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryFinalPretreatment' as NCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'UG'
  and NCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 UG Measurement M Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.MCategoryIntegratedStage' as MCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'UG'
  and MCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 UG Measurement M Category Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.MCategoryFinalPretreatment' as MCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'UG'
  and MCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 UG Measurement Grade Of Differentiation At Diagnosis

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
    Record ->> '$.PrimaryPathway.Diagnosis.GradeOfDifferentiationAtDiagnosis.@code' as GradeOfDifferentiationAtDiagnosis
from omop_staging.cosd_staging_901
where type = 'UG'
  and GradeOfDifferentiationAtDiagnosis is not null;
	

Comment or raise an issue for this mapping.

COSD V9 UG Measurement Adult Comorbidity Evaluation 27 Score

• Value copied from MeasurementDate

• MeasurementDate Measurement date is the earliest available date from referral, specialist first seen, diagnosis, staging, treatment start, or procedure dates. DATE FIRST SEEN, DATE FIRST SEEN (CANCER SPECIALIST), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT), TNM STAGE GROUPING DATE (INTEGRATED), TREATMENT START DATE (CANCER), PROCEDURE DATE

with UG as (
    select
        Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
        Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeenCancerSpecialist' as DateFirstSeenCancerSpecialist,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage' as StageDateFinalPretreatmentStage,
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage' as StageDateIntegratedStage,
        coalesce(Record ->> '$.Treatment[0].TreatmentStartDateCancer', Record ->> '$.Treatment.TreatmentStartDateCancer') as TreatmentStartDateCancer,
        coalesce(Record ->> '$.Treatment[0].Surgery.ProcedureDate', Record ->> '$.Treatment.Surgery.ProcedureDate') as ProcedureDate,
        Record ->> '$.CancerCarePlan.AdultComorbidityEvaluation-27Score.@code' as AdultComorbidityEvaluation27Score,
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber
    from omop_staging.cosd_staging_901
    where type = 'UG'
)
select distinct
    AdultComorbidityEvaluation27Score,
    NhsNumber,
    least(
        cast(DateFirstSeen as date),
        cast(DateFirstSeenCancerSpecialist as date),
        cast(DateOfPrimaryDiagnosisClinicallyAgreed as date),
        cast(StageDateFinalPretreatmentStage as date),
        cast(nullif(StageDateIntegratedStage, '') as date),
        cast(TreatmentStartDateCancer as date),
        cast(ProcedureDate as date)
    ) as MeasurementDate
from UG
where AdultComorbidityEvaluation27Score is not null
  and not (
      DateFirstSeen is null and
      DateFirstSeenCancerSpecialist is null and
      DateOfPrimaryDiagnosisClinicallyAgreed is null and
      StageDateFinalPretreatmentStage is null and
      StageDateIntegratedStage is null and
      TreatmentStartDateCancer is null and
      ProcedureDate is null
  );

Comment or raise an issue for this mapping.

COSD V8 UG Measurement Tumour Laterality

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with UG as (
    select
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
    from omop_staging.cosd_staging_81
    where type = 'UG'
)
select distinct
    NhsNumber,
    coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
    TumourLaterality
from UG
where TumourLaterality is not null
  and TumourLaterality in ('L', 'R', 'M', 'B');
	

Comment or raise an issue for this mapping.

COSD V8 UG Measurement Primary Pathway Metastatic Site

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with ug as (
    select distinct
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        unnest(
            [
                [ Record ->> '$.UpperGI.UpperGICore.UpperGICoreDiagnosis.MetastaticSite.@code' ],
                Record ->> '$.UpperGI.UpperGICore.UpperGICoreDiagnosis.MetastaticSite[*].@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_81
    where type = 'UG'
)
select distinct
    NhsNumber,
    ClinicalDateCancerDiagnosis,
    MetastaticSite
from ug
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V8 UG Measurement Non Primary Pathway Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    Record ->> '$.UpperGI.UpperGICore.UpperGICoreNonPrimaryCancerPathwayRoute.MetastaticSite.@code' as MetastaticSite
from omop_staging.cosd_staging_81
where type = 'UG'
  and MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V8 UG Measurement Integrated Stage TNM Stage Grouping

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with UG as (
    select
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreStaging.IntegratedStageTNMStageGrouping' as IntegratedStageTNMStageGrouping
    from omop_staging.cosd_staging_81
    where type = 'UG'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    IntegratedStageTNMStageGrouping
from UG
where IntegratedStageTNMStageGrouping is not null;
	

Comment or raise an issue for this mapping.

COSD V8 UG Measurement Integrated Stage T Category

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with UG as (
    select
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreStaging.IntegratedStageTCategory' as IntegratedStageTCategory
    from omop_staging.cosd_staging_81
    where type = 'UG'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    IntegratedStageTCategory
from UG
where IntegratedStageTCategory is not null;
	

Comment or raise an issue for this mapping.

COSD V8 UG Measurement Integrated Stage N Category

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with UG as (
    select
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreStaging.IntegratedStageNCategory' as IntegratedStageNCategory
    from omop_staging.cosd_staging_81
    where type = 'UG'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    IntegratedStageNCategory
from UG
where IntegratedStageNCategory is not null;
	

Comment or raise an issue for this mapping.

COSD V8 UG Measurement Integrated Stage M Category

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with UG as (
    select
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreStaging.IntegratedStageMCategory' as IntegratedStageMCategory
    from omop_staging.cosd_staging_81
    where type = 'UG'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    IntegratedStageMCategory
from UG
where IntegratedStageMCategory is not null;
	

Comment or raise an issue for this mapping.

COSD V8 UG Measurement Grade Of Differentiation

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with UG as (
    select
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreDiagnosis.DiagnosisGradeOfDifferentiation.@code' as GradeOfDifferentiationAtDiagnosis
    from omop_staging.cosd_staging_81
    where type = 'UG'
)
select distinct
    NhsNumber,
    coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
    GradeOfDifferentiationAtDiagnosis
from UG
where GradeOfDifferentiationAtDiagnosis is not null;
	

Comment or raise an issue for this mapping.

COSD V8 UG Measurement Final Pretreatment TNM Stage Grouping

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with UG as (
    select
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreStaging.FinalPreTreatmentTNMStageGrouping' as FinalPreTreatmentTNMStageGrouping
    from omop_staging.cosd_staging_81
    where type = 'UG'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    FinalPreTreatmentTNMStageGrouping
from UG
where FinalPreTreatmentTNMStageGrouping is not null;
	

Comment or raise an issue for this mapping.

COSD V8 UG Measurement Final Pretreatment T Category

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with UG as (
    select
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreStaging.FinalPreTreatmentTCategory' as FinalPreTreatmentTCategory
    from omop_staging.cosd_staging_81
    where type = 'UG'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    FinalPreTreatmentTCategory
from UG
where FinalPreTreatmentTCategory is not null;
	

Comment or raise an issue for this mapping.

COSD V8 UG Measurement Final Pretreatment N Category

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with UG as (
    select
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreStaging.FinalPreTreatmentNCategory' as FinalPreTreatmentNCategory
    from omop_staging.cosd_staging_81
    where type = 'UG'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    FinalPreTreatmentNCategory
from UG
where FinalPreTreatmentNCategory is not null;
	

Comment or raise an issue for this mapping.

COSD V8 UG Measurement Final Pretreatment M Category

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with UG as (
    select
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreStaging.FinalPreTreatmentMCategory' as FinalPreTreatmentMCategory
    from omop_staging.cosd_staging_81
    where type = 'UG'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    FinalPreTreatmentMCategory
from UG
where FinalPreTreatmentMCategory is not null;
	

Comment or raise an issue for this mapping.

COSD V8 UG Measurement Adult Comorbidity Evaluation

• Value copied from MeasurementDate

• MeasurementDate Measurement date is the earliest available date from referral, specialist first seen, diagnosis, or staging dates. DATE FIRST SEEN, DATE FIRST SEEN (CANCER SPECIALIST), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT), TNM STAGE GROUPING DATE (INTEGRATED)

with UG as (
    select
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreReferralAndFirstStageOfPatientPathway.SpecialistDateFirstSeen' as SpecialistDateFirstSeen,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreStaging.FinalPreTreatmentTNMStageGroupingDate' as FinalPreTreatmentTNMStageGroupingDate,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreStaging.IntegratedStageTNMStageGroupingDate' as IntegratedStageTNMStageGroupingDate,
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreCancerCarePlan.AdultComorbidityEvaluation.@code' as AdultComorbidityEvaluation
    from omop_staging.cosd_staging_81
    where type = 'UG'
)
select distinct
    NhsNumber,
    AdultComorbidityEvaluation,
    least(
        cast(DateFirstSeen as date),
        cast(SpecialistDateFirstSeen as date),
        cast(ClinicalDateCancerDiagnosis as date),
        cast(FinalPreTreatmentTNMStageGroupingDate as date),
        cast(IntegratedStageTNMStageGroupingDate as date)
    ) as MeasurementDate
from UG
where AdultComorbidityEvaluation is not null
  and not (
      DateFirstSeen is null and
      SpecialistDateFirstSeen is null and
      ClinicalDateCancerDiagnosis is null and
      FinalPreTreatmentTNMStageGroupingDate is null and
      IntegratedStageTNMStageGroupingDate is null
  );

Comment or raise an issue for this mapping.

COSD V9 SK Measurement TNM Stage Grouping Integrated

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingIntegrated' as TnmStageGroupingIntegrated
from omop_staging.cosd_staging_901
where type = 'SK'
  and TnmStageGroupingIntegrated is not null;
	

Comment or raise an issue for this mapping.

COSD V9 SK Measurement TNM Stage Grouping Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingFinalPretreatment' as TnmStageGroupingFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'SK'
  and TnmStageGroupingFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 SK Measurement T Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryIntegratedStage' as TCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'SK'
  and TCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 SK Measurement T Category Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryFinalPretreatment' as TCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'SK'
  and TCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 SK Measurement Primary Pathway Metastatic Site

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SK as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis.MetastaticSite.@code' ],
                Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'SK'
)
select distinct
    NhsNumber,
    DateOfPrimaryDiagnosisClinicallyAgreed,
    MetastaticSite
from SK
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 SK Measurement Non Primary Pathway Recurrence Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SK as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence.MetastaticSite.@code' ],
                Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'SK'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from SK
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 SK Measurement Non Primary Pathway Progression Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SK as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression.MetastaticSite.@code' ],
                Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'SK'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from SK
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 SK Measurement N Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryIntegratedStage' as NCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'SK'
  and NCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 SK Measurement N Category Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryFinalPretreatment' as NCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'SK'
  and NCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 SK Measurement M Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.MCategoryIntegratedStage' as MCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'SK'
  and MCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 SK Measurement M Category Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.MCategoryFinalPretreatment' as MCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'SK'
  and MCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 SK Measurement Grade Of Differentiation

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
    Record ->> '$.PrimaryPathway.Diagnosis.GradeOfDifferentiationAtDiagnosis.@code' as GradeOfDifferentiationAtDiagnosis
from omop_staging.cosd_staging_901
where type = 'SK'
  and GradeOfDifferentiationAtDiagnosis is not null;
	

Comment or raise an issue for this mapping.

COSD V9 SK Measurement Adult Comorbidity Evaluation

• Value copied from MeasurementDate

• MeasurementDate Measurement date is the earliest available date from the cancer pathway. DATE FIRST SEEN, DATE FIRST SEEN (CANCER SPECIALIST), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT), TNM STAGE GROUPING DATE (INTEGRATED)

with SK as (
	select
		Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
		Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeenCancerSpecialist' as DateFirstSeenCancerSpecialist,
		Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
		Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage' as StageDateIntegratedStage,
		Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage' as StageDateFinalPretreatmentStage,
		Record ->> '$."CancerCarePlan"."AdultComorbidityEvaluation-27Score"."@code"' as AdultComorbidityEvaluation27Score,
		Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber
	from omop_staging.cosd_staging_901
	where type = 'SK'
)
select
	distinct
		AdultComorbidityEvaluation27Score,
		NhsNumber,
		least(
			cast(DateFirstSeen as date),
			cast(DateFirstSeenCancerSpecialist as date),
			cast(DateOfPrimaryDiagnosisClinicallyAgreed as date),
			cast(StageDateFinalPretreatmentStage as date),
			cast(nullif(StageDateIntegratedStage, '') as date)
		) as MeasurementDate
from SK
where AdultComorbidityEvaluation27Score is not null
  and not (
		DateFirstSeen is null and
		DateFirstSeenCancerSpecialist is null and
		DateOfPrimaryDiagnosisClinicallyAgreed is null and
		StageDateFinalPretreatmentStage is null and
		StageDateIntegratedStage is null
    );

Comment or raise an issue for this mapping.

COSD V8 SK Measurement Tumour Laterality

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SK as (
    select
        Record ->> '$.Skin.SkinCore.SkinCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Skin.SkinCore.SkinCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Skin.SkinCore.SkinCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        Record ->> '$.Skin.SkinCore.SkinCoreLinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
    from omop_staging.cosd_staging_81
    where Type = 'SK'
)
select distinct
    NhsNumber,
    coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
    TumourLaterality
from SK
where TumourLaterality is not null
  and TumourLaterality in ('L','R','M','B');
	

Comment or raise an issue for this mapping.

COSD V8 SK Measurement TNM Stage Grouping Integrated

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SK as (
	select
		Record ->> '$.Skin.SkinCore.SkinCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
		Record ->> '$.Skin.SkinCore.SkinCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
		Record ->> '$.Skin.SkinCore.SkinCoreStaging.IntegratedStageTNMStageGrouping' as TnmStageGroupingIntegrated,
		Record ->> '$.Skin.SkinCore.SkinCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
	from omop_staging.cosd_staging_81
	where Type = 'SK'
)
select distinct
	NhsNumber,
	coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
	TnmStageGroupingIntegrated
from SK
where TnmStageGroupingIntegrated is not null;
	

Comment or raise an issue for this mapping.

COSD V8 SK Measurement TNM Stage Grouping Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SK as (
	select
		Record ->> '$.Skin.SkinCore.SkinCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
		Record ->> '$.Skin.SkinCore.SkinCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
		Record ->> '$.Skin.SkinCore.SkinCoreStaging.FinalPreTreatmentTNMStageGrouping' as TnmStageGroupingFinalPreTreatment,
		Record ->> '$.Skin.SkinCore.SkinCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
	from omop_staging.cosd_staging_81
	where Type = 'SK'
)
select distinct
	NhsNumber,
	coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
	TnmStageGroupingFinalPreTreatment
from SK
where TnmStageGroupingFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD v8 SK Measurement TCategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SK as (
	select
		Record ->> '$.Skin.SkinCore.SkinCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
		Record ->> '$.Skin.SkinCore.SkinCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
		Record ->> '$.Skin.SkinCore.SkinCoreStaging.IntegratedStageTCategory' as TCategoryIntegratedStage,
		Record ->> '$.Skin.SkinCore.SkinCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
	from omop_staging.cosd_staging_81
	where Type = 'SK'
)
select distinct
	NhsNumber,
	coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
	TCategoryIntegratedStage
from SK
where TCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD v8 SK Measurement TCategory Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SK as (
	select
		Record ->> '$.Skin.SkinCore.SkinCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
		Record ->> '$.Skin.SkinCore.SkinCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
		Record ->> '$.Skin.SkinCore.SkinCoreStaging.FinalPreTreatmentTCategory' as TCategoryFinalPreTreatment,
		Record ->> '$.Skin.SkinCore.SkinCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
	from omop_staging.cosd_staging_81
	where Type = 'SK'
)
select distinct
	NhsNumber,
	coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
	TCategoryFinalPreTreatment
from SK
where TCategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD v8 SK Measurement Primary Pathway Metastatic Site

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SK as (
    select distinct
        Record ->> '$.Skin.SkinCore.SkinCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Skin.SkinCore.SkinCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        unnest(
            [
                [ Record ->> '$.Skin.SkinCore.SkinCoreDiagnosis.MetastaticSite.@code' ],
                Record ->> '$.Skin.SkinCore.SkinCoreDiagnosis.MetastaticSite[*].@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_81
    where Type = 'SK'
)
select distinct
    NhsNumber,
    ClinicalDateCancerDiagnosis,
    MetastaticSite
from SK
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD v8 SK Measurement Non Primary Pathway Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SK as (
	select
		Record ->> '$.Skin.SkinCore.SkinCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
		Record ->> '$.Skin.SkinCore.SkinCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
		Record ->> '$.Skin.SkinCore.SkinCoreNonPrimaryCancerPathwayRoute.MetastaticSite.@code' as MetastaticSite
	from omop_staging.cosd_staging_81
	where Type = 'SK'
)
select distinct
	NhsNumber,
	DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
	MetastaticSite
from SK
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD v8 SK Measurement NCategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SK as (
	select
		Record ->> '$.Skin.SkinCore.SkinCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
		Record ->> '$.Skin.SkinCore.SkinCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
		Record ->> '$.Skin.SkinCore.SkinCoreStaging.IntegratedStageNCategory' as NCategoryIntegratedStage,
		Record ->> '$.Skin.SkinCore.SkinCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
	from omop_staging.cosd_staging_81
	where Type = 'SK'
)
select distinct
	NhsNumber,
	coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
	NCategoryIntegratedStage
from SK
where NCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD v8 SK Measurement NCategory Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SK as (
	select
		Record ->> '$.Skin.SkinCore.SkinCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
		Record ->> '$.Skin.SkinCore.SkinCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
		Record ->> '$.Skin.SkinCore.SkinCoreStaging.FinalPreTreatmentNCategory' as NCategoryFinalPreTreatment,
		Record ->> '$.Skin.SkinCore.SkinCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
	from omop_staging.cosd_staging_81
	where Type = 'SK'
)
select distinct
	NhsNumber,
	coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
	NCategoryFinalPreTreatment
from SK
where NCategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD v8 SK Measurement MCategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SK as (
	select
		Record ->> '$.Skin.SkinCore.SkinCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
		Record ->> '$.Skin.SkinCore.SkinCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
		Record ->> '$.Skin.SkinCore.SkinCoreStaging.IntegratedStageMCategory' as MCategoryIntegratedStage,
		Record ->> '$.Skin.SkinCore.SkinCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
	from omop_staging.cosd_staging_81
	where Type = 'SK'
)
select distinct
	NhsNumber,
	coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
	MCategoryIntegratedStage
from SK
where MCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD v8 SK Measurement MCategory Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SK as (
	select
		Record ->> '$.Skin.SkinCore.SkinCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
		Record ->> '$.Skin.SkinCore.SkinCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
		Record ->> '$.Skin.SkinCore.SkinCoreStaging.FinalPreTreatmentMCategory' as MCategoryFinalPreTreatment,
		Record ->> '$.Skin.SkinCore.SkinCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
	from omop_staging.cosd_staging_81
	where Type = 'SK'
)
select distinct
	NhsNumber,
	coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
	MCategoryFinalPreTreatment
from SK
where MCategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD v8 SK Measurement Grade Of Differentiation

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SK as (
	select
		Record ->> '$.Skin.SkinCore.SkinCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
		Record ->> '$.Skin.SkinCore.SkinCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
		Record ->> '$.Skin.SkinCore.SkinCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
		Record ->> '$.Skin.SkinCore.SkinCoreDiagnosis.DiagnosisGradeOfDifferentiation.@code' as GradeOfDifferentiationAtDiagnosis
	from omop_staging.cosd_staging_81
	where Type = 'SK'
)
select distinct
	NhsNumber,
	coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
	GradeOfDifferentiationAtDiagnosis
from SK
where GradeOfDifferentiationAtDiagnosis is not null;
	

Comment or raise an issue for this mapping.

COSD v8 SK Measurement Adult Comorbidity Evaluation

• Value copied from MeasurementDate

• MeasurementDate Measurement date is the earliest available date from the cancer pathway. DATE FIRST SEEN, DATE FIRST SEEN (CANCER SPECIALIST), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

with SK as (
	select
		Record ->> '$.Skin.SkinCore.SkinCoreReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
		Record ->> '$.Skin.SkinCore.SkinCoreReferralAndFirstStageOfPatientPathway.SpecialistDateFirstSeen' as SpecialistDateFirstSeen,
		Record ->> '$.Skin.SkinCore.SkinCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
		Record ->> '$.Skin.SkinCore.SkinCoreStaging.IntegratedStageTNMStageGroupingDate' as IntegratedStageTNMStageGroupingDate,
		Record ->> '$.Skin.SkinCore.SkinCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as FinalPreTreatmentTNMStageGroupingDate,
		Record ->> '$.Skin.SkinCore.SkinCoreCancerCarePlan.AdultComorbidityEvaluation.@code' as AdultComorbidityEvaluation,
		Record ->> '$.Skin.SkinCore.SkinCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber
	from omop_staging.cosd_staging_81
	where Type = 'SK'
)
select
	distinct
		AdultComorbidityEvaluation,
		NhsNumber,
		least(
			cast(DateFirstSeen as date),
			cast(SpecialistDateFirstSeen as date),
			cast(ClinicalDateCancerDiagnosis as date),
			cast(IntegratedStageTNMStageGroupingDate as date),
			cast(FinalPreTreatmentTNMStageGroupingDate as date)
		) as MeasurementDate
from SK
where AdultComorbidityEvaluation is not null
  and not (
		DateFirstSeen is null and
		SpecialistDateFirstSeen is null and
		ClinicalDateCancerDiagnosis is null and
		IntegratedStageTNMStageGroupingDate is null and
		FinalPreTreatmentTNMStageGroupingDate is null
    );

Comment or raise an issue for this mapping.

COSD V9 SA Measurement Tumour Laterality

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
from omop_staging.cosd_staging_901
where type = 'SA'
  and TumourLaterality is not null
  and TumourLaterality in ('L','R','M','B');
	

Comment or raise an issue for this mapping.

COSD V9 SA Measurement TNM Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingIntegrated' as TnmStageGroupingIntegrated
from omop_staging.cosd_staging_901
where type = 'SA'
  and TnmStageGroupingIntegrated is not null;
	

Comment or raise an issue for this mapping.

COSD V9 SA Measurement TNM Category Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingFinalPretreatment' as TnmStageGroupingFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'SA'
  and TnmStageGroupingFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 SA Measurement Tcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryIntegratedStage' as TCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'SA'
  and TCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 SA Measurement Tcategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryFinalPretreatment' as TCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'SA'
  and TCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 SA Measurement Sarcoma Tumour Site Soft Tissue

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
    Record ->> '$.PrimaryPathway.Diagnosis.DiagnosisBoneAndSoftTissue.SarcomaTumourSiteSoftTissue.@code' as SarcomaTumourSiteSoftTissue
from omop_staging.cosd_staging_901
where type = 'SA'
  and SarcomaTumourSiteSoftTissue is not null;
	

Comment or raise an issue for this mapping.

COSD V9 SA Measurement Sarcoma Tumour Site Bone

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
    Record ->> '$.PrimaryPathway.Diagnosis.DiagnosisBoneAndSoftTissue.SarcomaTumourSiteBone.@code' as SarcomaTumourSiteBone
from omop_staging.cosd_staging_901
where type = 'SA'
  and SarcomaTumourSiteBone is not null;
	

Comment or raise an issue for this mapping.

COSD V9 SA Measurement Primary Pathway Metastatic Site

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SA as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis.MetastaticSite.@code' ],
                Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'SA'
)
select distinct
    NhsNumber,
    DateOfPrimaryDiagnosisClinicallyAgreed,
    MetastaticSite
from SA
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 SA Measurement Non Primary Pathway Recurrence Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SA as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence.MetastaticSite.@code' ],
                Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'SA'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from SA
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 SA Measurement Non Primary Pathway Progression Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SA as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression.MetastaticSite.@code' ],
                Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'SA'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from SA
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 SA Measurement Ncategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryIntegratedStage' as NCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'SA'
  and NCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 SA Measurement Ncategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryFinalPretreatment' as NCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'SA'
  and NCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 SA Measurement Mcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.MCategoryIntegratedStage' as MCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'SA'
  and MCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 SA Measurement Mcategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.MCategoryFinalPretreatment' as MCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'SA'
  and MCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 SA Measurement Grade Of Differentiation

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
    Record ->> '$.PrimaryPathway.Diagnosis.GradeOfDifferentiationAtDiagnosis.@code' as GradeOfDifferentiationAtDiagnosis
from omop_staging.cosd_staging_901
where type = 'SA'
  and GradeOfDifferentiationAtDiagnosis is not null;
	

Comment or raise an issue for this mapping.

COSD V9 SA Measurement Adult Comorbidity Evaluation

• Value copied from MeasurementDate

• MeasurementDate Measurement date derived as the earliest available date from the patient pathway. DATE FIRST SEEN, DATE FIRST SEEN (CANCER SPECIALIST), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT), TNM STAGE GROUPING DATE (INTEGRATED), TREATMENT START DATE (CANCER), PROCEDURE DATE

with SA as (
    select
        Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
        Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeenCancerSpecialist' as DateFirstSeenCancerSpecialist,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage' as StageDateFinalPretreatmentStage,
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage' as StageDateIntegratedStage,
        coalesce(Record ->> '$.Treatment[0].TreatmentStartDateCancer', Record ->> '$.Treatment.TreatmentStartDateCancer') as TreatmentStartDateCancer,
        coalesce(Record ->> '$.Treatment[0].Surgery.ProcedureDate', Record ->> '$.Treatment.Surgery.ProcedureDate') as ProcedureDate,
        Record ->> '$."CancerCarePlan"."AdultComorbidityEvaluation-27Score"."@code"' as AdultComorbidityEvaluation27Score,
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber
    from omop_staging.cosd_staging_901
    where type = 'SA'
)
select distinct
    NhsNumber,
    AdultComorbidityEvaluation27Score,
    least(
        cast(DateFirstSeen as date),
        cast(DateFirstSeenCancerSpecialist as date),
        cast(DateOfPrimaryDiagnosisClinicallyAgreed as date),
        cast(StageDateFinalPretreatmentStage as date),
        cast(nullif(StageDateIntegratedStage, '') as date),
        cast(TreatmentStartDateCancer as date),
        cast(ProcedureDate as date)
    ) as MeasurementDate
from SA
where AdultComorbidityEvaluation27Score is not null
  and not (
        DateFirstSeen is null and
        DateFirstSeenCancerSpecialist is null and
        DateOfPrimaryDiagnosisClinicallyAgreed is null and
        StageDateFinalPretreatmentStage is null and
        StageDateIntegratedStage is null and
        TreatmentStartDateCancer is null and
        ProcedureDate is null
    );

Comment or raise an issue for this mapping.

COSD v8 SA Measurement Tumour Laterality

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SA as (
    select
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
    from omop_staging.cosd_staging_81
    where type = 'SA'
)
select distinct
    NhsNumber,
    coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
    TumourLaterality
from SA
where TumourLaterality is not null
  and TumourLaterality in ('L','R','M','B');
	

Comment or raise an issue for this mapping.

COSD v8 SA Measurement TNMcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SA as (
    select
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreStaging.IntegratedStageTNMStageGrouping' as TnmStageGroupingIntegrated,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where type = 'SA'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TnmStageGroupingIntegrated
from SA
where TnmStageGroupingIntegrated is not null;
	

Comment or raise an issue for this mapping.

COSD v8 SA Measurement TNMcategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SA as (
    select
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreStaging.FinalPreTreatmentTNMStageGrouping' as TnmStageGroupingFinalPretreatment,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
    from omop_staging.cosd_staging_81
    where type = 'SA'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TnmStageGroupingFinalPretreatment
from SA
where TnmStageGroupingFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD v8 SA Measurement Tcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SA as (
    select
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreStaging.IntegratedStageTCategory' as TCategoryIntegratedStage,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where type = 'SA'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TCategoryIntegratedStage
from SA
where TCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD v8 SA Measurement Tcategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SA as (
    select
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreStaging.FinalPreTreatmentTCategory' as TCategoryFinalPretreatment,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
    from omop_staging.cosd_staging_81
    where type = 'SA'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TCategoryFinalPretreatment
from SA
where TCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD v8 SA Measurement Sarcoma Tumour Site Soft Tissue

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SA as (
    select
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreDiagnosis.SarcomaDiagnosisBoneAndSoftTissue.SarcomaTumourSiteSoftTissue.@code' as SarcomaTumourSiteSoftTissue
    from omop_staging.cosd_staging_81
    where type = 'SA'
)
select distinct
    NhsNumber,
    ClinicalDateCancerDiagnosis,
    SarcomaTumourSiteSoftTissue
from SA
where SarcomaTumourSiteSoftTissue is not null;
	

Comment or raise an issue for this mapping.

COSD v8 SA Measurement Sarcoma Tumour Site Bone

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SA as (
    select
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreDiagnosis.SarcomaDiagnosisBoneAndSoftTissue.BoneSarcomaTumourSite.@code' as SarcomaTumourSiteBone
    from omop_staging.cosd_staging_81
    where type = 'SA'
)
select distinct
    NhsNumber,
    ClinicalDateCancerDiagnosis,
    SarcomaTumourSiteBone
from SA
where SarcomaTumourSiteBone is not null;
	

Comment or raise an issue for this mapping.

COSD v8 SA Measurement Primary Pathway Metastatic Site

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SA as (
    select
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreDiagnosis.MetastaticSite.@code' as MetastaticSite
    from omop_staging.cosd_staging_81
    where type = 'SA'
)
select distinct
    NhsNumber,
    ClinicalDateCancerDiagnosis,
    MetastaticSite
from SA
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD v8 SA Measurement Non Primary Pathway Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SA as (
    select
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreNonPrimaryCancerPathwayRoute.MetastaticSite.@code' as MetastaticSite
    from omop_staging.cosd_staging_81
    where type = 'SA'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from SA
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD v8 SA Measurement Ncategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SA as (
    select
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreStaging.IntegratedStageNCategory' as NCategoryIntegratedStage,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where type = 'SA'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    NCategoryIntegratedStage
from SA
where NCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD v8 SA Measurement Ncategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SA as (
    select
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreStaging.FinalPreTreatmentNCategory' as NCategoryFinalPretreatment,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
    from omop_staging.cosd_staging_81
    where type = 'SA'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    NCategoryFinalPretreatment
from SA
where NCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD v8 SA Measurement Mcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SA as (
    select
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreStaging.IntegratedStageMCategory' as MCategoryIntegratedStage,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where type = 'SA'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    MCategoryIntegratedStage
from SA
where MCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD v8 SA Measurement Mcategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SA as (
    select
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreStaging.FinalPreTreatmentMCategory' as MCategoryFinalPretreatment,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
    from omop_staging.cosd_staging_81
    where type = 'SA'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    MCategoryFinalPretreatment
from SA
where MCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD v8 SA Measurement Grade Of Differentiation

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with SA as (
    select
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreDiagnosis.DiagnosisGradeOfDifferentiation.@code' as GradeOfDifferentiationAtDiagnosis
    from omop_staging.cosd_staging_81
    where type = 'SA'
)
select distinct
    NhsNumber,
    coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
    GradeOfDifferentiationAtDiagnosis
from SA
where GradeOfDifferentiationAtDiagnosis is not null;
	

Comment or raise an issue for this mapping.

COSD v8 SA Measurement Adult Comorbidity Evaluation

• Value copied from MeasurementDate

• MeasurementDate Measurement date derived as the earliest available date from the patient pathway. DATE FIRST SEEN, DATE FIRST SEEN (CANCER SPECIALIST), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT), TREATMENT START DATE (CANCER), PROCEDURE DATE

with SA as (
    select
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreReferralAndFirstStageOfPatientPathway.SpecialistDateFirstSeen' as SpecialistDateFirstSeen,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreStaging.IntegratedStageTNMStageGroupingDate' as IntegratedStageTNMStageGroupingDate,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as FinalPreTreatmentTNMStageGroupingDate,
        coalesce(Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreTreatment[0].CancerTreatmentStartDate', Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreTreatment.CancerTreatmentStartDate') as CancerTreatmentStartDate,
        coalesce(Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreTreatment[0].SarcomaCoreSurgeryAndOtherProcedures.ProcedureDate', Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreTreatment.SarcomaCoreSurgeryAndOtherProcedures.ProcedureDate') as ProcedureDate,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreCancerCarePlan.AdultComorbidityEvaluation.@code' as AdultComorbidityEvaluation,
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber
    from omop_staging.cosd_staging_81
    where type = 'SA'
)
select distinct
    NhsNumber,
    AdultComorbidityEvaluation,
    least(
        cast(DateFirstSeen as date),
        cast(SpecialistDateFirstSeen as date),
        cast(ClinicalDateCancerDiagnosis as date),
        cast(IntegratedStageTNMStageGroupingDate as date),
        cast(FinalPreTreatmentTNMStageGroupingDate as date),
        cast(CancerTreatmentStartDate as date),
        cast(ProcedureDate as date)
    ) as MeasurementDate
from SA
where AdultComorbidityEvaluation is not null
  and not (
        DateFirstSeen is null and
        SpecialistDateFirstSeen is null and
        ClinicalDateCancerDiagnosis is null and
        IntegratedStageTNMStageGroupingDate is null and
        FinalPreTreatmentTNMStageGroupingDate is null and
        CancerTreatmentStartDate is null and
        ProcedureDate is null
    );

Comment or raise an issue for this mapping.

COSD V9 LV Measurement Tumour Laterality

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
from omop_staging.cosd_staging_901
where type = 'LV'
  and TumourLaterality is not null
  and TumourLaterality in ('L','R','M','B');

Comment or raise an issue for this mapping.

COSD V9 LV Measurement TNM Stage Grouping Integrated

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingIntegrated' as TnmStageGroupingIntegrated
from omop_staging.cosd_staging_901
where type = 'LV'
  and TnmStageGroupingIntegrated is not null;

Comment or raise an issue for this mapping.

COSD V9 LV Measurement TNM Stage Grouping Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingFinalPretreatment' as TnmStageGroupingFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'LV'
  and TnmStageGroupingFinalPretreatment is not null;

Comment or raise an issue for this mapping.

COSD V9 LV Measurement Tcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryIntegratedStage' as TCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'LV'
  and TCategoryIntegratedStage is not null;

Comment or raise an issue for this mapping.

COSD V9 LV Measurement Tcategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryFinalPretreatment' as TcategoryFinalPreTreatment
from omop_staging.cosd_staging_901
where type = 'LV'
  and TcategoryFinalPreTreatment is not null;

Comment or raise an issue for this mapping.

COSD V9 LV Measurement Primary Pathway Metastatic Site

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with lv as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis.MetastaticSite.@code' ],
                Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'LV'
)
select distinct
    NhsNumber,
    DateOfPrimaryDiagnosisClinicallyAgreed,
    MetastaticSite
from lv
where MetastaticSite is not null
  and MetastaticSite != '97';

Comment or raise an issue for this mapping.

COSD V9 LV Measurement Non Primary Pathway Recurrence Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with lv as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence.MetastaticSite.@code' ],
                Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'LV'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from lv
where MetastaticSite is not null
  and MetastaticSite != '97';

Comment or raise an issue for this mapping.

COSD V9 LV Measurement Non Primary Pathway Progression Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with lv as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression.MetastaticSite.@code' ],
                Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'LV'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from lv
where MetastaticSite is not null
  and MetastaticSite != '97';

Comment or raise an issue for this mapping.

COSD V9 LV Measurement Ncategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryIntegratedStage' as NCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'LV'
  and NCategoryIntegratedStage is not null;

Comment or raise an issue for this mapping.

COSD V9 LV Measurement Ncategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryFinalPretreatment' as NcategoryFinalPreTreatment
from omop_staging.cosd_staging_901
where type = 'LV'
  and NcategoryFinalPreTreatment is not null;

Comment or raise an issue for this mapping.

COSD V9 LV Measurement Mcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.MCategoryIntegratedStage' as MCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'LV'
  and MCategoryIntegratedStage is not null;

Comment or raise an issue for this mapping.

COSD V9 LV Measurement Mcategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.MCategoryFinalPretreatment' as McategoryFinalPreTreatment
from omop_staging.cosd_staging_901
where type = 'LV'
  and McategoryFinalPreTreatment is not null;

Comment or raise an issue for this mapping.

COSD V9 LV Measurement Grade Of Differentiation

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
    Record ->> '$.PrimaryPathway.Diagnosis.GradeOfDifferentiationAtDiagnosis.@code' as GradeOfDifferentiationAtDiagnosis
from omop_staging.cosd_staging_901
where type = 'LV'
  and GradeOfDifferentiationAtDiagnosis is not null;

Comment or raise an issue for this mapping.

COSD V9 LV Measurement Adult Comorbidity Evaluation

• Value copied from MeasurementDate

• MeasurementDate Measurement date is the earliest available date from the patient pathway. DATE FIRST SEEN, DATE FIRST SEEN (CANCER SPECIALIST), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT), TNM STAGE GROUPING DATE (INTEGRATED), TREATMENT START DATE (CANCER), PROCEDURE DATE

with lv as (
    select
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
        Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeenCancerSpecialist' as DateFirstSeenCancerSpecialist,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage' as StageDateFinalPretreatmentStage,
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage' as StageDateIntegratedStage,
        coalesce(Record ->> '$.Treatment[0].TreatmentStartDateCancer', Record ->> '$.Treatment.TreatmentStartDateCancer') as TreatmentStartDateCancer,
        coalesce(Record ->> '$.Treatment[0].Surgery.ProcedureDate', Record ->> '$.Treatment.Surgery.ProcedureDate') as ProcedureDate,
        Record ->> '$.CancerCarePlan.AdultComorbidityEvaluation-27Score.@code' as AdultComorbidityEvaluation
    from omop_staging.cosd_staging_901
    where type = 'LV'
)
select
    distinct
        AdultComorbidityEvaluation,
        NhsNumber,
        least(
            cast(DateFirstSeen as date),
            cast(DateFirstSeenCancerSpecialist as date),
            cast(DateOfPrimaryDiagnosisClinicallyAgreed as date),
            cast(StageDateFinalPretreatmentStage as date),
            cast(nullif(StageDateIntegratedStage, '') as date),
            cast(TreatmentStartDateCancer as date),
            cast(ProcedureDate as date)
        ) as MeasurementDate
from lv
where AdultComorbidityEvaluation is not null
  and not (
        DateFirstSeen is null and
        DateFirstSeenCancerSpecialist is null and
        DateOfPrimaryDiagnosisClinicallyAgreed is null and
        StageDateFinalPretreatmentStage is null and
        StageDateIntegratedStage is null and
        TreatmentStartDateCancer is null and
        ProcedureDate is null
    );

Comment or raise an issue for this mapping.

COSD v8 LV Measurement Tumour Laterality

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with lv as (
    select
        Record ->> '$.Liver.LiverCore.LiverCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Liver.LiverCore.LiverCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Liver.LiverCore.LiverCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        Record ->> '$.Liver.LiverCore.LiverCoreLinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
    from omop_staging.cosd_staging_81
    where Type = 'LV'
)
select distinct
    NhsNumber,
    coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
    TumourLaterality
from lv
where TumourLaterality is not null
  and TumourLaterality in ('L','R','M','B');

Comment or raise an issue for this mapping.

COSD v8 LV Measurement TNM Stage Grouping Integrated

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

with lv as (
    select
        Record ->> '$.Liver.LiverCore.LiverCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Liver.LiverCore.LiverCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Liver.LiverCore.LiverCoreStaging.IntegratedStageTNMStageGrouping' as TnmStageGroupingIntegrated,
        Record ->> '$.Liver.LiverCore.LiverCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where Type = 'LV'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TnmStageGroupingIntegrated
from lv
where TnmStageGroupingIntegrated is not null;

Comment or raise an issue for this mapping.

COSD v8 LV Measurement Tcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

with lv as (
    select
        Record ->> '$.Liver.LiverCore.LiverCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Liver.LiverCore.LiverCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Liver.LiverCore.LiverCoreStaging.IntegratedStageTCategory' as TCategoryIntegratedStage,
        Record ->> '$.Liver.LiverCore.LiverCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where Type = 'LV'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TCategoryIntegratedStage
from lv
where TCategoryIntegratedStage is not null;

Comment or raise an issue for this mapping.

COSD v8 LV Measurement Primary Pathway Metastatic Site

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with lv as (
    select
        Record ->> '$.Liver.LiverCore.LiverCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Liver.LiverCore.LiverCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Liver.LiverCore.LiverCoreDiagnosis.MetastaticSite.@code' as MetastaticSite
    from omop_staging.cosd_staging_81
    where Type = 'LV'
)
select distinct
    NhsNumber,
    ClinicalDateCancerDiagnosis,
    MetastaticSite
from lv
where MetastaticSite is not null
  and MetastaticSite != '97';

Comment or raise an issue for this mapping.

COSD v8 LV Measurement Ncategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

with lv as (
    select
        Record ->> '$.Liver.LiverCore.LiverCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Liver.LiverCore.LiverCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Liver.LiverCore.LiverCoreStaging.IntegratedStageNCategory' as NCategoryIntegratedStage,
        Record ->> '$.Liver.LiverCore.LiverCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where Type = 'LV'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    NCategoryIntegratedStage
from lv
where NCategoryIntegratedStage is not null;

Comment or raise an issue for this mapping.

COSD v8 LV Measurement Mcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

with lv as (
    select
        Record ->> '$.Liver.LiverCore.LiverCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Liver.LiverCore.LiverCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Liver.LiverCore.LiverCoreStaging.IntegratedStageMCategory' as MCategoryIntegratedStage,
        Record ->> '$.Liver.LiverCore.LiverCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where Type = 'LV'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    MCategoryIntegratedStage
from lv
where MCategoryIntegratedStage is not null;

Comment or raise an issue for this mapping.

COSD v8 LV Measurement Grade Of Differentiation

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with lv as (
    select
        Record ->> '$.Liver.LiverCore.LiverCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Liver.LiverCore.LiverCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Liver.LiverCore.LiverCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        Record ->> '$.Liver.LiverCore.LiverCoreDiagnosis.DiagnosisGradeOfDifferentiation.@code' as GradeOfDifferentiationAtDiagnosis
    from omop_staging.cosd_staging_81
    where Type = 'LV'
)
select distinct
    NhsNumber,
    coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
    GradeOfDifferentiationAtDiagnosis
from lv
where GradeOfDifferentiationAtDiagnosis is not null;

Comment or raise an issue for this mapping.

COSD v8 LV Measurement Adult Comorbidity Evaluation

• Value copied from MeasurementDate

• MeasurementDate Measurement date is the earliest available date from the patient pathway. DATE FIRST SEEN, DATE FIRST SEEN (CANCER SPECIALIST), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED), TREATMENT START DATE (CANCER), PROCEDURE DATE

with lv as (
    select
        Record ->> '$.Liver.LiverCore.LiverCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Liver.LiverCore.LiverCoreReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
        Record ->> '$.Liver.LiverCore.LiverCoreReferralAndFirstStageOfPatientPathway.SpecialistDateFirstSeen' as SpecialistDateFirstSeen,
        Record ->> '$.Liver.LiverCore.LiverCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Liver.LiverCore.LiverCoreStaging.IntegratedStageTNMStageGroupingDate' as IntegratedStageTNMStageGroupingDate,
        Record ->> '$.Liver.LiverCore.LiverCoreTreatment.CancerTreatmentStartDate' as CancerTreatmentStartDate,
        Record ->> '$.Liver.LiverCore.LiverCoreTreatment.LiverCoreSurgeryAndOtherProcedures.ProcedureDate' as ProcedureDate,
        Record ->> '$.Liver.LiverCore.LiverCoreCancerCarePlan.AdultComorbidityEvaluation.@code' as AdultComorbidityEvaluation
    from omop_staging.cosd_staging_81
    where Type = 'LV'
)
select
    distinct
        AdultComorbidityEvaluation,
        NhsNumber,
        least(
            cast(DateFirstSeen as date),
            cast(SpecialistDateFirstSeen as date),
            cast(ClinicalDateCancerDiagnosis as date),
            cast(IntegratedStageTNMStageGroupingDate as date),
            cast(CancerTreatmentStartDate as date),
            cast(ProcedureDate as date)
        ) as MeasurementDate
from lv
where AdultComorbidityEvaluation is not null
  and not (
        DateFirstSeen is null and
        SpecialistDateFirstSeen is null and
        ClinicalDateCancerDiagnosis is null and
        IntegratedStageTNMStageGroupingDate is null and
        CancerTreatmentStartDate is null and
        ProcedureDate is null
    );

Comment or raise an issue for this mapping.

COSD V9 Lung Measurement Tumour Laterality

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select 
	distinct
	    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NHSNumber,
	    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
	    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
from omop_staging.cosd_staging_901
where type = 'LU'
  and (Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.TumourLaterality.@code') in ('L','R','M','B')
	

Comment or raise an issue for this mapping.

COSD V9 Lung Measurement TNM Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NHSNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingIntegrated' as TnmStageGroupingIntegrated
from omop_staging.cosd_staging_901
where type = 'LU'
  and TnmStageGroupingIntegrated is not null
  and NHSNumber is not null
	

Comment or raise an issue for this mapping.

COSD V9 Lung Measurement TNM Category Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

select 
  distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NHSNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingFinalPretreatment' as TnmStageGroupingFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'LU'
  and TnmStageGroupingFinalPretreatment is not null
  and NHSNumber is not null
	

Comment or raise an issue for this mapping.

COSD V9 Lung Measurement T Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

select 
  distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NHSNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryIntegratedStage' as TCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'LU'
  and TCategoryIntegratedStage is not null
  and NHSNumber is not null
	

Comment or raise an issue for this mapping.

COSD V9 Lung Measurement T Category Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

select 
  distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NHSNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryFinalPretreatment' as TcategoryFinalPreTreatment
from omop_staging.cosd_staging_901
where type = 'LU'
  and TcategoryFinalPreTreatment is not null
  and NHSNumber is not null
	

Comment or raise an issue for this mapping.

COSD V9 Lung Measurement Primary Pathway Metastasis

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with lung as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NHSNumber,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        unnest ([[Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis.MetastaticType.@code'], Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis[*].MetastaticType.@code'], recursive := true) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'LU'
)
select distinct
    NHSNumber,
    DateOfPrimaryDiagnosisClinicallyAgreed,
    MetastaticSite
from lung
where MetastaticSite is not null
  and MetastaticSite != '97'
	

Comment or raise an issue for this mapping.

COSD V9 Lung Measurement Non Primary Pathway Recurrence Metastasis

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the non-primary cancer was confirmed or the diagnosis was agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with lung as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NHSNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest ([[Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence.MetastaticSite.@code'], Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence[*].MetastaticSite.@code'], recursive := true) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'LU'
)
select distinct
    NHSNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from lung
where MetastaticSite is not null
  and MetastaticSite != '97'
	

Comment or raise an issue for this mapping.

COSD V9 Lung Measurement Non Primary Pathway Progression Metastasis

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the non-primary cancer was confirmed or the diagnosis was agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with lung as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NHSNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest ([[Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression.MetastaticSite.@code'], Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression[*].MetastaticSite.@code'], recursive := true) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'LU'
)
select
    distinct
    NHSNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from lung
where MetastaticSite is not null
  and MetastaticSite != '97'
	

Comment or raise an issue for this mapping.

COSD V9 Lung Measurement N Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate The date of the staging measurement, using the stage date if available, otherwise the diagnosis date. STAGE DATE FINAL PRETREATMENT STAGE / DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select 
  distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryIntegratedStage' as NCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'LU'
  and NCategoryIntegratedStage is not null
  and NhsNumber is not null
	

Comment or raise an issue for this mapping.

COSD V9 Lung Measurement N Category Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate The date of the staging measurement, using the stage date if available, otherwise the diagnosis date. STAGE DATE FINAL PRETREATMENT STAGE / DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select
  distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryFinalPretreatment' as NcategoryFinalPreTreatment
from omop_staging.cosd_staging_901
where type = 'LU'
  and NcategoryFinalPreTreatment is not null
  and NhsNumber is not null
	

Comment or raise an issue for this mapping.

COSD V9 Lung Measurement M Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate The date of the staging measurement, using the stage date if available, otherwise the diagnosis date. STAGE DATE FINAL PRETREATMENT STAGE / DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select 
  distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.MCategoryIntegratedStage' as MCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'LU'
  and MCategoryIntegratedStage is not null
  and NhsNumber is not null
	

Comment or raise an issue for this mapping.

COSD V9 Lung Measurement M Category Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate The date of the staging measurement, using the stage date if available, otherwise the diagnosis date. STAGE DATE FINAL PRETREATMENT STAGE / DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select 
  distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.MCategoryFinalPretreatment' as McategoryFinalPreTreatment
from omop_staging.cosd_staging_901
where type = 'LU'
  and McategoryFinalPreTreatment is not null
  and NhsNumber is not null
	

Comment or raise an issue for this mapping.

COSD V9 Lung Measurement Grade of Differentiation (At Diagnosis)

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select
    distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        Record ->> '$.PrimaryPathway.Diagnosis.GradeOfDifferentiationAtDiagnosis.@code' as GradeOfDifferentiationAtDiagnosis
from omop_staging.cosd_staging_901
where Type = 'LU'
  and GradeOfDifferentiationAtDiagnosis is not null
  and NhsNumber is not null
	

Comment or raise an issue for this mapping.

COSD V8 Lung Measurement Tumour Laterality

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. If this is not available, then it is the date when the diagnosis of the Non-Primary Cancer was clinically agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with lung as (
    select
        Record ->> '$.Lung.LungCore.LungCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Lung.LungCore.LungCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Lung.LungCore.LungCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        Record ->> '$.Lung.LungCore.LungCoreLinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
    from omop_staging.cosd_staging_81
    where Type = 'LU'
)
select distinct
    NhsNumber,
    coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
    TumourLaterality
from lung
where TumourLaterality is not null
  and TumourLaterality in ('L','R','M','B')
  and NhsNumber is not null;

	

Comment or raise an issue for this mapping.

COSD V8 Lung Measurement TNM Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

with lung as (
    select
        Record ->> '$.Lung.LungCore.LungCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Lung.LungCore.LungCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Lung.LungCore.LungCoreStaging.IntegratedStageTNMStageGrouping' as TnmStageGroupingIntegrated,
        Record ->> '$.Lung.LungCore.LungCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where Type = 'LU'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TnmStageGroupingIntegrated
from lung
where TnmStageGroupingIntegrated is not null
and NhsNumber is not null;

	

Comment or raise an issue for this mapping.

COSD V8 Lung Measurement TNM Category Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

with lung as (
    select
        Record ->> '$.Lung.LungCore.LungCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Lung.LungCore.LungCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Lung.LungCore.LungCoreStaging.FinalPreTreatmentTNMStageGrouping' as TnmStageGroupingFinalPretreatment,
        Record ->> '$.Lung.LungCore.LungCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
    from omop_staging.cosd_staging_81
    where Type = 'LU'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TnmStageGroupingFinalPretreatment
from lung
where TnmStageGroupingFinalPretreatment is not null
and NhsNumber is not null;

	

Comment or raise an issue for this mapping.

COSD V8 Lung Measurement T Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

with lung as (
    select
        Record ->> '$.Lung.LungCore.LungCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Lung.LungCore.LungCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Lung.LungCore.LungCoreStaging.IntegratedStageTCategory' as TCategoryIntegratedStage,
        Record ->> '$.Lung.LungCore.LungCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where Type = 'LU'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TCategoryIntegratedStage
from lung
where TCategoryIntegratedStage is not null
and NhsNumber is not null;

	

Comment or raise an issue for this mapping.

COSD V8 Lung Measurement T Category Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

with lung as (
    select
        Record ->> '$.Lung.LungCore.LungCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Lung.LungCore.LungCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Lung.LungCore.LungCoreStaging.FinalPreTreatmentTCategory' as TcategoryFinalPreTreatment,
        Record ->> '$.Lung.LungCore.LungCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
    from omop_staging.cosd_staging_81
    where Type = 'LU'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TcategoryFinalPreTreatment
from lung
where TcategoryFinalPreTreatment is not null
and NhsNumber is not null;

	

Comment or raise an issue for this mapping.

COSD V8 Lung Measurement Primary Pathway Metastasis

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis The date on which the diagnosis of cancer was made or agreed clinically, excluding the basis of screening alone. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with lung as (
select 
    Record ->> '$.Lung.LungCore.LungCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.Lung.LungCore.LungCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
    unnest(
      [
        [
          Record ->> '$.Lung.LungCore.LungCoreDiagnosis.MetastaticSite.@code'
        ], 
        Record ->> '$.Lung.LungCore.LungCoreDiagnosis.MetastaticSite[*].@code'
      ], recursive := true
    ) as MetastaticSite
from omop_staging.cosd_staging_81
where Type = 'LU'
)
select distinct
    NhsNumber,
    ClinicalDateCancerDiagnosis,
    MetastaticSite
from lung
where MetastaticSite is not null
  and MetastaticSite != 97
  and NhsNumber is not null;

	

Comment or raise an issue for this mapping.

COSD V8 Lung Measurement Non Primary Pathway Metastasis

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed The date when the diagnosis of the Non-Primary Cancer was clinically agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with lung as (
    select distinct
        Record ->> '$.Lung.LungCore.LungCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Lung.LungCore.LungCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.Lung.LungCore.LungCoreNonPrimaryCancerPathwayRoute.MetastaticSite.@code' ],
                Record ->> '$.Lung.LungCore.LungCoreNonPrimaryCancerPathwayRoute.MetastaticSite[*].@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_81
    where type = 'LU'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from lung
where MetastaticSite is not null
  and MetastaticSite != '97'
  and NhsNumber is not null;

	

Comment or raise an issue for this mapping.

COSD V8 Lung Measurement N Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

with lung as (
	select 
		Record ->> '$.Lung.LungCore.LungCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
		Record ->> '$.Lung.LungCore.LungCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
		Record ->> '$.Lung.LungCore.LungCoreStaging.IntegratedStageNCategory' as NCategoryIntegratedStage,
		Record ->> '$.Lung.LungCore.LungCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
	from omop_staging.cosd_staging_81
	where Type = 'LU'
)
select distinct
	NhsNumber,
	coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
	NCategoryIntegratedStage
from lung
where NCategoryIntegratedStage is not null
and NhsNumber is not null;

	

Comment or raise an issue for this mapping.

COSD V8 Lung Measurement N Category (Final Pretreatment)

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

with lung as (
	select 
		Record ->> '$.Lung.LungCore.LungCoreLinkagePatientId.NHSNumber.@extension' as NHSNumber,
		Record ->> '$.Lung.LungCore.LungCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
		Record ->> '$.Lung.LungCore.LungCoreStaging.FinalPreTreatmentNCategory' as NcategoryFinalPreTreatment,
		Record ->> '$.Lung.LungCore.LungCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
	from omop_staging.cosd_staging_81
	where Type = 'LU'
)
select distinct
	NHSNumber,
	coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
	NcategoryFinalPreTreatment
from lung
where NcategoryFinalPreTreatment is not null
and NHSNumber is not null;
	

Comment or raise an issue for this mapping.

COSD V8 Lung Measurement M Category (Integrated Stage)

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

with lung as (
	select 
		Record ->> '$.Lung.LungCore.LungCoreLinkagePatientId.NHSNumber.@extension' as NHSNumber,
		Record ->> '$.Lung.LungCore.LungCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
		Record ->> '$.Lung.LungCore.LungCoreStaging.IntegratedStageMCategory' as MCategoryIntegratedStage,
		Record ->> '$.Lung.LungCore.LungCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
	from omop_staging.cosd_staging_81
	where Type = 'LU'
)
select distinct
	NHSNumber,
	coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
	MCategoryIntegratedStage
from lung
where MCategoryIntegratedStage is not null
and NHSNumber is not null;
	

Comment or raise an issue for this mapping.

COSD V8 Lung Measurement M Category (Final Pretreatment)

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

with lung as (
	select 
		Record ->> '$.Lung.LungCore.LungCoreLinkagePatientId.NHSNumber.@extension' as NHSNumber,
		Record ->> '$.Lung.LungCore.LungCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
		Record ->> '$.Lung.LungCore.LungCoreStaging.FinalPreTreatmentMCategory' as McategoryFinalPreTreatment,
		Record ->> '$.Lung.LungCore.LungCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
	from omop_staging.cosd_staging_81
	where Type = 'LU'
)
select distinct
	NHSNumber,
	coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
	McategoryFinalPreTreatment
from lung
where McategoryFinalPreTreatment is not null
and NHSNumber is not null;
	

Comment or raise an issue for this mapping.

COSD V8 Lung Measurement Grade of Differentiation (At Diagnosis)

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with lung as (
	select 
		Record ->> '$.Lung.LungCore.LungCoreLinkagePatientId.NHSNumber.@extension' as NHSNumber,
		Record ->> '$.Lung.LungCore.LungCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
		Record ->> '$.Lung.LungCore.LungCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
		Record ->> '$.Lung.LungCore.LungCoreDiagnosis.DiagnosisGradeOfDifferentiation.@code' as GradeOfDifferentiationAtDiagnosis
	from omop_staging.cosd_staging_81
	where Type = 'LU'
)
select distinct
	NHSNumber,
	coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
	GradeOfDifferentiationAtDiagnosis
from lung
where GradeOfDifferentiationAtDiagnosis is not null
and NHSNumber is not null;
	

Comment or raise an issue for this mapping.

COSD V9 HN Measurement Tnm Stage Grouping Integrated

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract TNM Stage Grouping (Integrated) for HN cancer area from COSD v9.
-- The TNM stage grouping classifies the combination of tumour, node and metastases into stage groupings after treatment and/or after all available evidence has been collected.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- TnmStageGroupingIntegrated will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingIntegrated' as TnmStageGroupingIntegrated
from omop_staging.cosd_staging_901
where type = 'HN'
  and TnmStageGroupingIntegrated is not null;

Comment or raise an issue for this mapping.

COSD V9 HN Measurement Tnm Stage Grouping Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract TNM Stage Grouping (Final Pretreatment) for HN cancer area from COSD v9.
-- The TNM stage grouping classifies the combination of tumour, node and metastases into stage groupings before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- TnmStageGroupingFinalPretreatment will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingFinalPretreatment' as TnmStageGroupingFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'HN'
  and TnmStageGroupingFinalPretreatment is not null;

Comment or raise an issue for this mapping.

COSD V9 HN Measurement T Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract T Category (Integrated Stage) for HN cancer area from COSD v9.
-- The T category classifies the size and extent of the primary tumour after treatment and/or after all available evidence has been collected.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- TCategoryIntegratedStage will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryIntegratedStage' as TCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'HN'
  and TCategoryIntegratedStage is not null;

Comment or raise an issue for this mapping.

COSD V9 HN Measurement T Category Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract T Category (Final Pretreatment) for HN cancer area from COSD v9.
-- The T category classifies the size and extent of the primary tumour before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- TCategoryFinalPretreatment will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryFinalPretreatment' as TCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'HN'
  and TCategoryFinalPretreatment is not null;

Comment or raise an issue for this mapping.

COSD V9 HN Measurement Primary Pathway Metastatic Site

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Metastatic Site from the Primary Pathway for HN cancer area from COSD v9.
-- MetastaticSite records the site of metastatic disease at patient diagnosis, excluding code 97 (not applicable).
-- Uses unnest to flatten the array of metastatic sites into individual rows.
-- MetastaticSite will be mapped to a measurement concept in OMOP in a later step.
with hn as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis.MetastaticSite.@code' ],
                Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'HN'
)
select distinct
    NhsNumber,
    DateOfPrimaryDiagnosisClinicallyAgreed,
    MetastaticSite
from hn
where MetastaticSite is not null
  and MetastaticSite != '97';

Comment or raise an issue for this mapping.

COSD V9 HN Measurement Non Primary Pathway Recurrence Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Metastatic Site from the Non Primary Pathway (Recurrence) for HN cancer area from COSD v9.
-- MetastaticSite records the site of metastatic disease at recurrence, excluding code 97 (not applicable).
-- Uses unnest to flatten the array of metastatic sites into individual rows.
-- MetastaticSite will be mapped to a measurement concept in OMOP in a later step.
with hn as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence.MetastaticSite.@code' ],
                Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'HN'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from hn
where MetastaticSite is not null
  and MetastaticSite != '97';

Comment or raise an issue for this mapping.

COSD V9 HN Measurement Non Primary Pathway Progression Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Metastatic Site from the Non Primary Pathway (Progression) for HN cancer area from COSD v9.
-- MetastaticSite records the site of metastatic disease at progression, excluding code 97 (not applicable).
-- Uses unnest to flatten the array of metastatic sites into individual rows.
-- MetastaticSite will be mapped to a measurement concept in OMOP in a later step.
with hn as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression.MetastaticSite.@code' ],
                Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'HN'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from hn
where MetastaticSite is not null
  and MetastaticSite != '97';

Comment or raise an issue for this mapping.

COSD V9 HN Measurement N Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract N Category (Integrated Stage) for HN cancer area from COSD v9.
-- The N category classifies the absence or presence and extent of regional lymph node metastases after treatment and/or after all available evidence has been collected.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- NCategoryIntegratedStage will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryIntegratedStage' as NCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'HN'
  and NCategoryIntegratedStage is not null;

Comment or raise an issue for this mapping.

COSD V9 HN Measurement N Category Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract N Category (Final Pretreatment) for HN cancer area from COSD v9.
-- The N category classifies the absence or presence and extent of regional lymph node metastases before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- NCategoryFinalPretreatment will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryFinalPretreatment' as NCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'HN'
  and NCategoryFinalPretreatment is not null;

Comment or raise an issue for this mapping.

COSD V9 HN Measurement M Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract M Category (Integrated Stage) for HN cancer area from COSD v9.
-- The M category classifies the absence or presence of distant metastases after treatment and/or after all available evidence has been collected.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- MCategoryIntegratedStage will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.MCategoryIntegratedStage' as MCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'HN'
  and MCategoryIntegratedStage is not null;

Comment or raise an issue for this mapping.

COSD V9 HN Measurement M Category Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract M Category (Final Pretreatment) for HN cancer area from COSD v9.
-- The M category classifies the absence or presence of distant metastases before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- MCategoryFinalPretreatment will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.MCategoryFinalPretreatment' as MCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'HN'
  and MCategoryFinalPretreatment is not null;

Comment or raise an issue for this mapping.

COSD V9 HN Measurement Grade Of Differentiation At Diagnosis

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Grade of Differentiation (At Diagnosis) for HN cancer area from COSD v9.
-- The grade represents the definitive grade of the tumour at the time of patient diagnosis.
-- GradeOfDifferentiationAtDiagnosis will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
    Record ->> '$.PrimaryPathway.Diagnosis.GradeOfDifferentiationAtDiagnosis.@code' as GradeOfDifferentiationAtDiagnosis
from omop_staging.cosd_staging_901
where type = 'HN'
  and GradeOfDifferentiationAtDiagnosis is not null;

Comment or raise an issue for this mapping.

COSD V9 HN Measurement Adult Comorbidity Evaluation

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement date is the earliest available date from: Date First Seen, Date First Seen (Cancer Specialist), Date of Primary Cancer Diagnosis (Clinically Agreed), TNM Stage Grouping Date (Final Pretreatment), TNM Stage Grouping Date (Integrated), and Procedure Date. DATE FIRST SEEN, DATE FIRST SEEN (CANCER SPECIALIST), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT), TNM STAGE GROUPING DATE (INTEGRATED), PROCEDURE DATE

-- Query to extract Adult Comorbidity Evaluation - 27 Score for HN cancer area from COSD v9.
-- The ACE-27 score is a person score recorded during a Cancer Care Spell using the ACE-27 assessment tool.
-- MeasurementDate is the earliest available date across referral, diagnosis, staging, and procedure dates.
-- AdultComorbidityEvaluation will be mapped to a measurement concept in OMOP in a later step.
with hn as (
    select
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
        Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeenCancerSpecialist' as DateFirstSeenCancerSpecialist,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage' as StageDateFinalPretreatmentStage,
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage' as StageDateIntegratedStage,
        coalesce(Record ->> '$.Treatment[0].Surgery.ProcedureDate', Record ->> '$.Treatment.Surgery.ProcedureDate') as ProcedureDate,
        Record ->> '$.CancerCarePlan.AdultComorbidityEvaluation-27Score.@code' as AdultComorbidityEvaluation
    from omop_staging.cosd_staging_901
    where type = 'HN'
)
select
    distinct
        NhsNumber,
        AdultComorbidityEvaluation,
        least(
            DateFirstSeen,
            DateFirstSeenCancerSpecialist,
            DateOfPrimaryDiagnosisClinicallyAgreed,
            StageDateFinalPretreatmentStage,
            StageDateIntegratedStage,
            ProcedureDate
        ) as MeasurementDate
from hn
where AdultComorbidityEvaluation is not null
  and not (
        DateFirstSeen is null and
        DateFirstSeenCancerSpecialist is null and
        DateOfPrimaryDiagnosisClinicallyAgreed is null and
        StageDateFinalPretreatmentStage is null and
        StageDateIntegratedStage is null and
        ProcedureDate is null
    );

Comment or raise an issue for this mapping.

COSD v8 HN Measurement Tumour Laterality

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Tumour Laterality for HN cancer area from COSD v8.
-- Identifies the side of the body for a tumour relating to paired organs, filtering only valid laterality codes.
-- MeasurementDate uses primary diagnosis date, falling back to non-primary diagnosis date.
-- TumourLaterality will be mapped to a measurement concept in OMOP in a later step.
with hn as (
    select
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
    from omop_staging.cosd_staging_81
    where type = 'HN'
)
select distinct
    NhsNumber,
    coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
    TumourLaterality
from hn
where TumourLaterality in ('L', 'R', 'M', 'B');

Comment or raise an issue for this mapping.

COSD v8 HN Measurement TNMcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract TNM Stage Grouping (Integrated) for HN cancer area from COSD v8.
-- The TNM stage grouping classifies the combination of tumour, node and metastases into stage groupings after treatment and/or after all available evidence has been collected.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- TnmStageGroupingIntegrated will be mapped to a measurement concept in OMOP in a later step.
with hn as (
    select
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreStaging.IntegratedStageTNMStageGrouping' as TnmStageGroupingIntegrated
    from omop_staging.cosd_staging_81
    where type = 'HN'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TnmStageGroupingIntegrated
from hn
where TnmStageGroupingIntegrated is not null;

Comment or raise an issue for this mapping.

COSD v8 HN Measurement TNMcategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract TNM Stage Grouping (Final Pretreatment) for HN cancer area from COSD v8.
-- The TNM stage grouping classifies the combination of tumour, node and metastases into stage groupings before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- TnmStageGroupingFinalPretreatment will be mapped to a measurement concept in OMOP in a later step.
with hn as (
    select
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreStaging.FinalPreTreatmentTNMStageGrouping' as TnmStageGroupingFinalPretreatment
    from omop_staging.cosd_staging_81
    where type = 'HN'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TnmStageGroupingFinalPretreatment
from hn
where TnmStageGroupingFinalPretreatment is not null;

Comment or raise an issue for this mapping.

COSD v8 HN Measurement Tcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract T Category (Integrated Stage) for HN cancer area from COSD v8.
-- The T category classifies the size and extent of the primary tumour after treatment and/or after all available evidence has been collected.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- TcategoryIntegratedStage will be mapped to a measurement concept in OMOP in a later step.
with hn as (
    select
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreStaging.IntegratedStageTCategory' as TcategoryIntegratedStage
    from omop_staging.cosd_staging_81
    where type = 'HN'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TcategoryIntegratedStage
from hn
where TcategoryIntegratedStage is not null;

Comment or raise an issue for this mapping.

COSD v8 HN Measurement Tcategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract T Category (Final Pretreatment) for HN cancer area from COSD v8.
-- The T category classifies the size and extent of the primary tumour before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- TcategoryFinalPreTreatment will be mapped to a measurement concept in OMOP in a later step.
with hn as (
    select
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreStaging.FinalPreTreatmentTCategory' as TcategoryFinalPreTreatment
    from omop_staging.cosd_staging_81
    where type = 'HN'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TcategoryFinalPreTreatment
from hn
where TcategoryFinalPreTreatment is not null;

Comment or raise an issue for this mapping.

COSD v8 HN Measurement Primary Pathway Metastatic Site

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Metastatic Site from the Primary Pathway for HN cancer area from COSD v8.
-- MetastaticSite records the site of metastatic disease at patient diagnosis, excluding code 97 (not applicable).
-- MetastaticSite will be mapped to a measurement concept in OMOP in a later step.
with hn as (
    select
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreDiagnosis.MetastaticSite.@code' as MetastaticSite
    from omop_staging.cosd_staging_81
    where type = 'HN'
)
select distinct
    NhsNumber,
    ClinicalDateCancerDiagnosis,
    MetastaticSite
from hn
where MetastaticSite is not null
  and MetastaticSite != '97';

Comment or raise an issue for this mapping.

COSD v8 HN Measurement Non Primary Pathway Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Metastatic Site from the Non Primary Pathway for HN cancer area from COSD v8.
-- MetastaticSite records the site of metastatic disease in the non-primary cancer pathway, excluding code 97 (not applicable).
-- MetastaticSite will be mapped to a measurement concept in OMOP in a later step.
with hn as (
    select
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreNonPrimaryCancerPathwayRoute.MetastaticSite.@code' as MetastaticSite
    from omop_staging.cosd_staging_81
    where type = 'HN'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from hn
where MetastaticSite is not null
  and MetastaticSite != '97';

Comment or raise an issue for this mapping.

COSD v8 HN Measurement Ncategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract N Category (Integrated Stage) for HN cancer area from COSD v8.
-- The N category classifies the absence or presence and extent of regional lymph node metastases after treatment and/or after all available evidence has been collected.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- NcategoryIntegratedStage will be mapped to a measurement concept in OMOP in a later step.
with hn as (
    select
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreStaging.IntegratedStageNCategory' as NcategoryIntegratedStage
    from omop_staging.cosd_staging_81
    where type = 'HN'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    NcategoryIntegratedStage
from hn
where NcategoryIntegratedStage is not null;

Comment or raise an issue for this mapping.

COSD v8 HN Measurement Ncategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract N Category (Final Pretreatment) for HN cancer area from COSD v8.
-- The N category classifies the absence or presence and extent of regional lymph node metastases before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- NcategoryFinalPreTreatment will be mapped to a measurement concept in OMOP in a later step.
with hn as (
    select
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreStaging.FinalPreTreatmentNCategory' as NcategoryFinalPreTreatment
    from omop_staging.cosd_staging_81
    where type = 'HN'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    NcategoryFinalPreTreatment
from hn
where NcategoryFinalPreTreatment is not null;

Comment or raise an issue for this mapping.

COSD v8 HN Measurement Mcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract M Category (Integrated Stage) for HN cancer area from COSD v8.
-- The M category classifies the absence or presence of distant metastases after treatment and/or after all available evidence has been collected.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- McategoryIntegratedStage will be mapped to a measurement concept in OMOP in a later step.
with hn as (
    select
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreStaging.IntegratedStageMCategory' as McategoryIntegratedStage
    from omop_staging.cosd_staging_81
    where type = 'HN'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    McategoryIntegratedStage
from hn
where McategoryIntegratedStage is not null;

Comment or raise an issue for this mapping.

COSD v8 HN Measurement Mcategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract M Category (Final Pretreatment) for HN cancer area from COSD v8.
-- The M category classifies the absence or presence of distant metastases before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- McategoryFinalPreTreatment will be mapped to a measurement concept in OMOP in a later step.
with hn as (
    select
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreStaging.FinalPreTreatmentMCategory' as McategoryFinalPreTreatment
    from omop_staging.cosd_staging_81
    where type = 'HN'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    McategoryFinalPreTreatment
from hn
where McategoryFinalPreTreatment is not null;

Comment or raise an issue for this mapping.

COSD v8 HN Measurement Grade Of Differentiation

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Grade of Differentiation (At Diagnosis) for HN cancer area from COSD v8.
-- The grade represents the definitive grade of the tumour at the time of patient diagnosis.
-- MeasurementDate uses the diagnosis date, falling back to non-primary diagnosis date.
-- GradeOfDifferentiationAtDiagnosis will be mapped to a measurement concept in OMOP in a later step.
with hn as (
    select
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreDiagnosis.DiagnosisGradeOfDifferentiation.@code' as GradeOfDifferentiationAtDiagnosis
    from omop_staging.cosd_staging_81
    where type = 'HN'
)
select distinct
    NhsNumber,
    coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
    GradeOfDifferentiationAtDiagnosis
from hn
where GradeOfDifferentiationAtDiagnosis is not null;

Comment or raise an issue for this mapping.

COSD V8 HN Measurement Adult Comorbidity Evaluation

• Value copied from MeasurementDate

• MeasurementDate Measurement date is the earliest available date from: Date First Seen, Date First Seen (Cancer Specialist), Date of Primary Cancer Diagnosis (Clinically Agreed), TNM Stage Grouping Date (Final Pretreatment), and TNM Stage Grouping Date (Integrated). DATE FIRST SEEN, DATE FIRST SEEN (CANCER SPECIALIST), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT), TNM STAGE GROUPING DATE (INTEGRATED)

-- Query to extract Adult Comorbidity Evaluation score for HN cancer area from COSD v8.
-- The ACE-27 score is a person score recorded during a Cancer Care Spell using the ACE-27 assessment tool.
-- MeasurementDate is the earliest available date across referral, diagnosis, staging, and procedure dates.
-- AdultComorbidityEvaluation will be mapped to a measurement concept in OMOP in a later step.
with hn as (
    select
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreReferralAndFirstStageOfPatientPathway.SpecialistDateFirstSeen' as SpecialistDateFirstSeen,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as FinalPreTreatmentTNMStageGroupingDate,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreStaging.IntegratedStageTNMStageGroupingDate' as IntegratedStageTNMStageGroupingDate,
        Record ->> '$.HeadNeck.HeadNeckCore.HeadNeckCoreCancerCarePlan.AdultComorbidityEvaluation.@code' as AdultComorbidityEvaluation
    from omop_staging.cosd_staging_81
    where type = 'HN'
)
select
    distinct
        NhsNumber,
        AdultComorbidityEvaluation,
        least(
            cast(DateFirstSeen as date),
            cast(SpecialistDateFirstSeen as date),
            cast(ClinicalDateCancerDiagnosis as date),
            cast(FinalPreTreatmentTNMStageGroupingDate as date),
            cast(IntegratedStageTNMStageGroupingDate as date)
        ) as MeasurementDate
from hn
where AdultComorbidityEvaluation is not null
  and not (
        DateFirstSeen is null and
        SpecialistDateFirstSeen is null and
        ClinicalDateCancerDiagnosis is null and
        FinalPreTreatmentTNMStageGroupingDate is null and
        IntegratedStageTNMStageGroupingDate is null
    );

Comment or raise an issue for this mapping.

COSD V9 HA Measurement Tumour Laterality

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
    -- Tumour Laterality: side of body for tumour. Will be mapped to a measurement value concept in a later ETL step.
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
from omop_staging.cosd_staging_901
where type = 'HA'
  and TumourLaterality is not null;
	

Comment or raise an issue for this mapping.

COSD V9 HA Measurement Tnm Stage Grouping Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final Pretreatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    -- TNM Stage Grouping: combined TNM stage before treatment. Will be mapped to a measurement concept in a later ETL step.
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingFinalPretreatment' as TnmStageGroupingFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'HA'
  and TnmStageGroupingFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 HA Measurement T Category Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final Pretreatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    -- NHS Number: unique patient identifier
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    -- Measurement date: prefer stage date, fall back to primary diagnosis date
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    -- T Category: TNM T component of the final pretreatment staging. Will be mapped to a measurement concept in a later ETL step.
    Record ->> '$.PrimaryPathway.Staging.TCategoryFinalPretreatment' as TCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'HA'
  and TCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 HA Measurement RIPI Index For DLBCL Score

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
    -- R-IPI: Revised International Prognostic Index score for DLBCL. Numeric value (range 0-5). Will be stored as value_as_number in a later ETL step.
    Record ->> '$.CancerCarePlan.CancerCarePlanDLBCL.RipiIndexForDlbclScore.@value' as RIPIIndexForDLBCLScore
from omop_staging.cosd_staging_901
where type = 'HA'
  and RIPIIndexForDLBCLScore is not null;
	

Comment or raise an issue for this mapping.

COSD V9 HA Measurement Recurrence Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with ha as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        -- Metastatic Site from recurrence pathway. Unnested because MetastaticTypeAndSiteRecurrence may contain multiple entries.
        unnest(
            [
                [Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence.MetastaticSite.@code'],
                Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'HA'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from ha
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 HA Measurement Progression Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with ha as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        -- Metastatic Site from progression pathway. Unnested because MetastaticTypeAndSiteProgression may contain multiple entries.
        unnest(
            [
                [Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression.MetastaticSite.@code'],
                Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'HA'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from ha
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 HA Measurement Primary Pathway Metastatic Site

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with ha as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        -- Metastatic Site at primary diagnosis. Unnested because MetastaticTypeAndSiteDiagnosis may contain multiple entries.
        unnest(
            [
                [Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis.MetastaticSite.@code'],
                Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'HA'
)
select distinct
    NhsNumber,
    DateOfPrimaryDiagnosisClinicallyAgreed,
    MetastaticSite
from ha
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 HA Measurement N Category Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final Pretreatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    -- N Category: TNM N component of the final pretreatment staging. Will be mapped to a measurement concept in a later ETL step.
    Record ->> '$.PrimaryPathway.Staging.NCategoryFinalPretreatment' as NCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'HA'
  and NCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 HA Measurement M Category Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final Pretreatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    -- M Category: TNM M component of the final pretreatment staging. Will be mapped to a measurement concept in a later ETL step.
    Record ->> '$.PrimaryPathway.Staging.MCategoryFinalPretreatment' as MCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'HA'
  and MCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 HA Measurement Grade Of Differentiation

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
    -- Grade of Differentiation: definitive grade of tumour at diagnosis. Will be mapped to a measurement value concept in a later ETL step.
    Record ->> '$.PrimaryPathway.Diagnosis.GradeOfDifferentiationAtDiagnosis.@code' as GradeOfDifferentiationAtDiagnosis
from omop_staging.cosd_staging_901
where type = 'HA'
  and GradeOfDifferentiationAtDiagnosis is not null;
	

Comment or raise an issue for this mapping.

COSD V9 HA Measurement Binet Stage

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
    -- Binet Stage: CLL staging classification. Will be mapped to a measurement value concept in a later ETL step.
    Record ->> '$.PrimaryPathway.StagingSiteSpecific.StagingHaematological.StagingCLL.BinetStage.@code' as BinetStage
from omop_staging.cosd_staging_901
where type = 'HA'
  and BinetStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 HA Measurement Ann Arbor Stage

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with ha as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        -- Ann Arbor Stage: haematological staging based on location and extent of disease. Unnested because StagingSiteSpecific may contain multiple entries.
        unnest(
            [
                [Record ->> '$.PrimaryPathway.StagingSiteSpecific.StagingHaematological.StagingAnnArbor.AnnArborStage.@code'],
                Record ->> '$.PrimaryPathway.StagingSiteSpecific[*].StagingHaematological.StagingAnnArbor.AnnArborStage.@code'
            ],
            recursive := true
        ) as AnnArborStage
    from omop_staging.cosd_staging_901
    where type = 'HA'
)
select distinct
    NhsNumber,
    DateOfPrimaryDiagnosisClinicallyAgreed,
    AnnArborStage
from ha
where AnnArborStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 HA Measurement Ann Arbor Bulk Disease Indication Code

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
    -- Ann Arbor Bulky Disease: indicates presence of bulky disease. Will be mapped to a measurement value concept in a later ETL step.
    Record ->> '$.PrimaryPathway.AnnArborExtensions.AnnArborBulk.@code' as AnnArborBulk
from omop_staging.cosd_staging_901
where type = 'HA'
  and AnnArborBulk is not null;
	

Comment or raise an issue for this mapping.

COSD V9 HA Measurement Adult Comorbidity Evaluation

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
    -- ACE-27: Adult Comorbidity Evaluation score. Will be mapped to a measurement value concept in a later ETL step.
    Record ->> '$."CancerCarePlan"."AdultComorbidityEvaluation-27Score"."@code"' as AdultComorbidityEvaluation27Score
from omop_staging.cosd_staging_901
where type = 'HA'
  and AdultComorbidityEvaluation27Score is not null;
	

Comment or raise an issue for this mapping.

COSD V8 HA Measurement White Blood Cell Count Highest Pretreatment

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
    -- White Blood Cell Count (Highest Pretreatment): numeric lab result (max n3.n1). Will be stored as value_as_number in a later ETL step.
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalLaboratoryResultsVarious.WhiteBloodCellCountHighestPre.@value' as WhiteBloodCellCountHighestPretreatment
from omop_staging.cosd_staging_81
where type = 'HA'
  and WhiteBloodCellCountHighestPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V8 HA Measurement Tumour Laterality

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
    -- Tumour Laterality: side of body for tumour. Will be mapped to a measurement value concept in a later ETL step.
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
from omop_staging.cosd_staging_81
where type = 'HA'
  and TumourLaterality is not null;
	

Comment or raise an issue for this mapping.

COSD V8 HA Measurement Primary Pathway Metastatic Site

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
    -- Metastatic Site at primary diagnosis. Will be mapped to a measurement value concept in a later ETL step.
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreDiagnosis.MetastaticSite.@code' as MetastaticSite
from omop_staging.cosd_staging_81
where type = 'HA'
  and MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V8 HA Measurement Non Primary Pathway Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    -- Metastatic Site from non-primary cancer pathway. Will be mapped to a measurement value concept in a later ETL step.
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreNonPrimaryCancerPathwayRoute.MetastaticSite.@code' as MetastaticSite
from omop_staging.cosd_staging_81
where type = 'HA'
  and MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V8 HA Measurement Lymphocyte Count

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
    -- Lymphocyte Count: numeric lab result. Will be stored as value_as_number in a later ETL step.
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalLaboratoryResultsVarious.LymphocyteCount.@value' as LymphocyteCount
from omop_staging.cosd_staging_81
where type = 'HA'
  and LymphocyteCount is not null;
	

Comment or raise an issue for this mapping.

COSD V8 HA Measurement Lactate Dehydrogenase Level

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
    -- Lactate Dehydrogenase Level: coded lab result indicating LDH status. Will be mapped to a measurement value concept in a later ETL step.
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalLaboratoryResultsVarious.LactateDehydrogenaseLevel.@code' as LactateDehydrogenaseLevel
from omop_staging.cosd_staging_81
where type = 'HA'
  and LactateDehydrogenaseLevel is not null;
	

Comment or raise an issue for this mapping.

COSD V8 HA Measurement Haemoglobin Concentration

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
    -- Haemoglobin Concentration: numeric lab result. Will be stored as value_as_number in a later ETL step. Definition not found in docs/.
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalLaboratoryResultsVarious.HaemoglobinConcentration.@value' as HaemoglobinConcentration
from omop_staging.cosd_staging_81
where type = 'HA'
  and HaemoglobinConcentration is not null;
	

Comment or raise an issue for this mapping.

COSD V8 HA Measurement Grade Of Differentiation

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
    -- Grade of Differentiation: definitive grade of tumour at diagnosis. Will be mapped to a measurement value concept in a later ETL step.
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreDiagnosis.DiagnosisGradeOfDifferentiation.@code' as DiagnosisGradeOfDifferentiation
from omop_staging.cosd_staging_81
where type = 'HA'
  and DiagnosisGradeOfDifferentiation is not null;
	

Comment or raise an issue for this mapping.

COSD V8 HA Measurement Final Pre Treatment Tcategory

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final Pretreatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with ha as (
    select distinct
        Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as FinalPreTreatmentTNMStageGroupingDate,
        -- T Category: TNM T component of the final pretreatment staging. Will be mapped to a measurement concept in a later ETL step.
        Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreStaging.FinalPreTreatmentTCategory' as FinalPreTreatmentTCategory
    from omop_staging.cosd_staging_81
    where type = 'HA'
)
select distinct
    NhsNumber,
    coalesce(FinalPreTreatmentTNMStageGroupingDate, ClinicalDateCancerDiagnosis) as MeasurementDate,
    FinalPreTreatmentTCategory
from ha
where FinalPreTreatmentTCategory is not null;
	

Comment or raise an issue for this mapping.

COSD V8 HA Measurement Final Pre Treatment Ncategory

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final Pretreatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with ha as (
    select distinct
        Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as FinalPreTreatmentTNMStageGroupingDate,
        -- N Category: TNM N component of the final pretreatment staging. Will be mapped to a measurement concept in a later ETL step.
        Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreStaging.FinalPreTreatmentNCategory' as FinalPreTreatmentNCategory
    from omop_staging.cosd_staging_81
    where type = 'HA'
)
select distinct
    NhsNumber,
    coalesce(FinalPreTreatmentTNMStageGroupingDate, ClinicalDateCancerDiagnosis) as MeasurementDate,
    FinalPreTreatmentNCategory
from ha
where FinalPreTreatmentNCategory is not null;
	

Comment or raise an issue for this mapping.

COSD V8 HA Measurement Final Pre Treatment Mcategory

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final Pretreatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with ha as (
    select distinct
        Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as FinalPreTreatmentTNMStageGroupingDate,
        -- M Category: TNM M component of the final pretreatment staging. Will be mapped to a measurement concept in a later ETL step.
        Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreStaging.FinalPreTreatmentMCategory' as FinalPreTreatmentMCategory
    from omop_staging.cosd_staging_81
    where type = 'HA'
)
select distinct
    NhsNumber,
    coalesce(FinalPreTreatmentTNMStageGroupingDate, ClinicalDateCancerDiagnosis) as MeasurementDate,
    FinalPreTreatmentMCategory
from ha
where FinalPreTreatmentMCategory is not null;
	

Comment or raise an issue for this mapping.

COSD V8 HA Measurement Beta 2 Microglobulin Level

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
    -- Beta 2 Microglobulin Level: numeric lab result. Will be stored as value_as_number in a later ETL step. Definition not found in docs/.
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalLaboratoryResultsVarious.Beta2MicroglobulinLevel.@value' as Beta2MicroglobulinLevel
from omop_staging.cosd_staging_81
where type = 'HA'
  and Beta2MicroglobulinLevel is not null;
	

Comment or raise an issue for this mapping.

COSD V8 HA Measurement Ann Arbor Stage

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
    -- Ann Arbor Stage: haematological staging based on location and extent of disease. Will be mapped to a measurement value concept in a later ETL step.
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreStaging.HaematologyStagingAnnArbor.AnnArborStage.@code' as AnnArborStage
from omop_staging.cosd_staging_81
where type = 'HA'
  and AnnArborStage is not null;
	

Comment or raise an issue for this mapping.

COSD V8 HA Measurement Adult Comorbidity Evaluation

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
    -- ACE-27: Adult Comorbidity Evaluation score. Will be mapped to a measurement value concept in a later ETL step.
    Record ->> '$.Haematological.HaematologicalCore.HaematologicalCoreCancerCarePlan.AdultComorbidityEvaluation.@code' as AdultComorbidityEvaluation
from omop_staging.cosd_staging_81
where type = 'HA'
  and AdultComorbidityEvaluation is not null;
	

Comment or raise an issue for this mapping.

COSD V9 GY Measurement Tumour Laterality

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
from omop_staging.cosd_staging_901
where type = 'GY'
  and TumourLaterality in ('L', 'R', 'M', 'B');
	

Comment or raise an issue for this mapping.

COSD V9 GY Measurement Tnm Stage Grouping Integrated

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingIntegrated' as TnmStageGroupingIntegrated
from omop_staging.cosd_staging_901
where type = 'GY'
  and TnmStageGroupingIntegrated is not null;
	

Comment or raise an issue for this mapping.

COSD V9 GY Measurement Tnm Stage Grouping Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingFinalPretreatment' as TnmStageGroupingFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'GY'
  and TnmStageGroupingFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 GY Measurement T Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryIntegratedStage' as TCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'GY'
  and TCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 GY Measurement T Category Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryFinalPretreatment' as TCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'GY'
  and TCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 GY Measurement Primary Pathway Metastatic Site

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with gy as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis.MetastaticSite.@code' ],
                Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'GY'
)
select distinct
    NhsNumber,
    DateOfPrimaryDiagnosisClinicallyAgreed,
    MetastaticSite
from gy
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 GY Measurement Non Primary Pathway Recurrence Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with gy as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence.MetastaticSite.@code' ],
                Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'GY'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from gy
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 GY Measurement Non Primary Pathway Progression Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with gy as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression.MetastaticSite.@code' ],
                Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'GY'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from gy
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 GY Measurement N Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryIntegratedStage' as NCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'GY'
  and NCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 GY Measurement N Category Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryFinalPretreatment' as NCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'GY'
  and NCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 GY Measurement M Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.MCategoryIntegratedStage' as MCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'GY'
  and MCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 GY Measurement M Category Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.MCategoryFinalPretreatment' as MCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'GY'
  and MCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 GY Measurement Adult Comorbidity Evaluation

• Value copied from MeasurementDate

• MeasurementDate Measurement date is the earliest available date from the patient pathway. DATE FIRST SEEN, DATE FIRST SEEN (CANCER SPECIALIST), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT), TNM STAGE GROUPING DATE (INTEGRATED), TREATMENT START DATE (CANCER), PROCEDURE DATE

with gy as (
    select
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
        Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeenCancerSpecialist' as DateFirstSeenCancerSpecialist,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage' as StageDateFinalPretreatmentStage,
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage' as StageDateIntegratedStage,
        coalesce(Record ->> '$.Treatment[0].TreatmentStartDateCancer', Record ->> '$.Treatment.TreatmentStartDateCancer') as TreatmentStartDateCancer,
        coalesce(Record ->> '$.Treatment[0].Surgery.ProcedureDate', Record ->> '$.Treatment.Surgery.ProcedureDate') as ProcedureDate,
        Record ->> '$.CancerCarePlan.AdultComorbidityEvaluation-27Score.@code' as AdultComorbidityEvaluation
    from omop_staging.cosd_staging_901
    where type = 'GY'
)
select
    distinct
        AdultComorbidityEvaluation,
        NhsNumber,
        least(
            cast(DateFirstSeen as date),
            cast(DateFirstSeenCancerSpecialist as date),
            cast(DateOfPrimaryDiagnosisClinicallyAgreed as date),
            cast(StageDateFinalPretreatmentStage as date),
            cast(nullif(StageDateIntegratedStage, '') as date),
            cast(TreatmentStartDateCancer as date),
            cast(ProcedureDate as date)
        ) as MeasurementDate
from gy
where AdultComorbidityEvaluation is not null
  and not (
        DateFirstSeen is null and
        DateFirstSeenCancerSpecialist is null and
        DateOfPrimaryDiagnosisClinicallyAgreed is null and
        StageDateFinalPretreatmentStage is null and
        StageDateIntegratedStage is null and
        TreatmentStartDateCancer is null and
        ProcedureDate is null
    );

Comment or raise an issue for this mapping.

COSD V8 GY Measurement Tumour Laterality

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with gy as (
    select
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
    from omop_staging.cosd_staging_81
    where type = 'GY'
)
select distinct
    NhsNumber,
    coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
    TumourLaterality
from gy
where TumourLaterality is not null
  and TumourLaterality in ('L', 'R', 'M', 'B');
	

Comment or raise an issue for this mapping.

COSD V8 GY Measurement TNM Stage Grouping Integrated

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with gy as (
    select
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreStaging.IntegratedStageTNMStageGrouping' as TnmStageGroupingIntegrated,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where type = 'GY'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TnmStageGroupingIntegrated
from gy
where TnmStageGroupingIntegrated is not null;
	

Comment or raise an issue for this mapping.

COSD V8 GY Measurement TNM Stage Grouping Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with gy as (
    select
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreStaging.FinalPreTreatmentTNMStageGrouping' as TnmStageGroupingFinalPretreatment,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
    from omop_staging.cosd_staging_81
    where type = 'GY'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TnmStageGroupingFinalPretreatment
from gy
where TnmStageGroupingFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V8 GY Measurement Tcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with gy as (
    select
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreStaging.IntegratedStageTCategory' as TCategoryIntegratedStage,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where type = 'GY'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TCategoryIntegratedStage
from gy
where TCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V8 GY Measurement Tcategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with gy as (
    select
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreStaging.FinalPreTreatmentTCategory' as TcategoryFinalPreTreatment,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
    from omop_staging.cosd_staging_81
    where type = 'GY'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TcategoryFinalPreTreatment
from gy
where TcategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V8 GY Measurement Primary Pathway Metastatic Site

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
    Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreDiagnosis.MetastaticSite.@code' as MetastaticSite
from omop_staging.cosd_staging_81
where type = 'GY'
  and MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V8 GY Measurement Non Primary Pathway Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreNonPrimaryCancerPathwayRoute.MetastaticSite.@code' as MetastaticSite
from omop_staging.cosd_staging_81
where type = 'GY'
  and MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V8 GY Measurement Ncategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with gy as (
    select
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreStaging.IntegratedStageNCategory' as NCategoryIntegratedStage,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where type = 'GY'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    NCategoryIntegratedStage
from gy
where NCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V8 GY Measurement Ncategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with gy as (
    select
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreStaging.FinalPreTreatmentNCategory' as NcategoryFinalPreTreatment,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
    from omop_staging.cosd_staging_81
    where type = 'GY'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    NcategoryFinalPreTreatment
from gy
where NcategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V8 GY Measurement Mcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with gy as (
    select
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreStaging.IntegratedStageMCategory' as MCategoryIntegratedStage,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where type = 'GY'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    MCategoryIntegratedStage
from gy
where MCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V8 GY Measurement Mcategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with gy as (
    select
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreStaging.FinalPreTreatmentMCategory' as McategoryFinalPreTreatment,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
    from omop_staging.cosd_staging_81
    where type = 'GY'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    McategoryFinalPreTreatment
from gy
where McategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V8 GY Measurement Adult Comorbidity Evaluation

• Value copied from MeasurementDate

• MeasurementDate Measurement date is the earliest available date from referral, specialist first seen, diagnosis, staging, treatment start, or procedure date. DATE FIRST SEEN, DATE FIRST SEEN (CANCER SPECIALIST), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT), TREATMENT START DATE (CANCER), PROCEDURE DATE

with gy as (
    select
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreReferralAndFirstStageOfPatientPathway.SpecialistDateFirstSeen' as SpecialistDateFirstSeen,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreStaging.IntegratedStageTNMStageGroupingDate' as IntegratedStageTNMStageGroupingDate,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as FinalPreTreatmentTNMStageGroupingDate,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreTreatment.CancerTreatmentStartDate' as CancerTreatmentStartDate,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreTreatment.GynaecologicalCoreSurgeryAndOtherProcedures.ProcedureDate' as ProcedureDate,
        Record ->> '$.Gynaecological.GynaecologicalCore.GynaecologicalCoreCancerCarePlan.AdultComorbidityEvaluation.@code' as AdultComorbidityEvaluation
    from omop_staging.cosd_staging_81
    where type = 'GY'
)
select distinct
    NhsNumber,
    AdultComorbidityEvaluation,
    least(
        cast(DateFirstSeen as date),
        cast(SpecialistDateFirstSeen as date),
        cast(ClinicalDateCancerDiagnosis as date),
        cast(IntegratedStageTNMStageGroupingDate as date),
        cast(FinalPreTreatmentTNMStageGroupingDate as date),
        cast(CancerTreatmentStartDate as date),
        cast(ProcedureDate as date)
    ) as MeasurementDate
from gy
where AdultComorbidityEvaluation is not null
  and not (
      DateFirstSeen is null and
      SpecialistDateFirstSeen is null and
      ClinicalDateCancerDiagnosis is null and
      IntegratedStageTNMStageGroupingDate is null and
      FinalPreTreatmentTNMStageGroupingDate is null and
      CancerTreatmentStartDate is null and
      ProcedureDate is null
  );

Comment or raise an issue for this mapping.

COSD V9 CT Measurement Tumour Laterality

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Tumour Laterality for CT cancer area from COSD v9.
-- TumourLaterality is a categorical code (L, R, M, B) identifying the side of the body for the tumour.
-- Only valid laterality codes (L, R, M, B) are included; codes 8 (Not Applicable) and 9 (Not Known) are excluded.
-- TumourLaterality will be mapped to a measurement value concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
from omop_staging.cosd_staging_901
where type = 'CT'
  and TumourLaterality is not null
  and TumourLaterality in ('L','R','M','B');
	

Comment or raise an issue for this mapping.

COSD V9 CT Measurement TNM Stage Grouping Integrated

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract TNM Stage Grouping (Integrated) for CT cancer area from COSD v9.
-- The TNM stage grouping classifies the combination of T, N, and M categories into stage groupings after treatment and/or after all available evidence.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- TnmStageGroupingIntegrated will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingIntegrated' as TnmStageGroupingIntegrated
from omop_staging.cosd_staging_901
where type = 'CT'
  and TnmStageGroupingIntegrated is not null;
	

Comment or raise an issue for this mapping.

COSD V9 CT Measurement TNM Stage Grouping Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract TNM Stage Grouping (Final Pretreatment) for CT cancer area from COSD v9.
-- The TNM stage grouping classifies the combination of T, N, and M categories into stage groupings before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- TnmStageGroupingFinalPretreatment will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingFinalPretreatment' as TnmStageGroupingFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'CT'
  and TnmStageGroupingFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 CT Measurement T Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract T Category (Integrated Stage) for CT cancer area from COSD v9.
-- The T category classifies the size and extent of the primary tumour after treatment and/or after all available evidence.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- TCategoryIntegratedStage will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryIntegratedStage' as TCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'CT'
  and TCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 CT Measurement T Category Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract T Category (Final Pretreatment) for CT cancer area from COSD v9.
-- The T category classifies the size and extent of the primary tumour before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- TCategoryFinalPretreatment will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryFinalPretreatment' as TCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'CT'
  and TCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD v9 CT Measurement Primary Pathway Metastatic Site

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Metastatic Site (Primary Pathway/Diagnosis) for CT cancer area from COSD v9.
-- MetastaticSite is a repeating field so unnest is used to normalise each site into its own row.
-- Code 97 (Not Applicable - Disease not spread) is excluded.
-- MetastaticSite will be mapped to a measurement value concept in OMOP in a later step.
with CT as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis.MetastaticSite.@code' ],
                Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'CT'
)
select distinct
    NhsNumber,
    DateOfPrimaryDiagnosisClinicallyAgreed,
    MetastaticSite
from CT
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD v9 CT Measurement Non Primary Pathway Recurrence Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Metastatic Site (Non-Primary Pathway/Recurrence) for CT cancer area from COSD v9.
-- MetastaticSite is a repeating field so unnest is used to normalise each site into its own row.
-- Code 97 (Not Applicable - Disease not spread) is excluded.
-- MetastaticSite will be mapped to a measurement value concept in OMOP in a later step.
with CT as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence.MetastaticSite.@code' ],
                Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'CT'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from CT
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD v9 CT Measurement Non Primary Pathway Progression Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Metastatic Site (Non-Primary Pathway/Progression) for CT cancer area from COSD v9.
-- MetastaticSite is a repeating field so unnest is used to normalise each site into its own row.
-- Code 97 (Not Applicable - Disease not spread) is excluded.
-- MetastaticSite will be mapped to a measurement value concept in OMOP in a later step.
with CT as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression.MetastaticSite.@code' ],
                Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'CT'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from CT
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD v9 CT Measurement N Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract N Category (Integrated Stage) for CT cancer area from COSD v9.
-- The N category classifies the absence or presence and extent of regional lymph node metastases after treatment and/or after all available evidence.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- NCategoryIntegratedStage will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryIntegratedStage' as NCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'CT'
  and NCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD v9 CT Measurement N Category Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract N Category (Final Pretreatment) for CT cancer area from COSD v9.
-- The N category classifies the absence or presence and extent of regional lymph node metastases before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- NCategoryFinalPretreatment will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryFinalPretreatment' as NCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'CT'
  and NCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD v9 CT Measurement M Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract M Category (Integrated Stage) for CT cancer area from COSD v9.
-- The M category classifies the absence or presence of distant metastases after treatment and/or after all available evidence.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- MCategoryIntegratedStage will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.MCategoryIntegratedStage' as MCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'CT'
  and MCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD v9 CT Measurement M Category Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract M Category (Final Pretreatment) for CT cancer area from COSD v9.
-- The M category classifies the absence or presence of distant metastases before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- MCategoryFinalPretreatment will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.MCategoryFinalPretreatment' as MCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'CT'
  and MCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD v9 CT Measurement Grade Of Differentiation

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Grade of Differentiation (At Diagnosis) for CT cancer area from COSD v9.
-- GradeOfDifferentiationAtDiagnosis is a categorical code (G1-G4, GX) describing tumour differentiation.
-- GradeOfDifferentiationAtDiagnosis will be mapped to a measurement value concept in OMOP in a later step.
select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
    Record ->> '$.PrimaryPathway.Diagnosis.GradeOfDifferentiationAtDiagnosis.@code' as GradeOfDifferentiationAtDiagnosis
from omop_staging.cosd_staging_901
where type = 'CT'
  and GradeOfDifferentiationAtDiagnosis is not null;
	

Comment or raise an issue for this mapping.

COSD v9 CT Measurement Adult Comorbidity Evaluation

• Value copied from MeasurementDate

• MeasurementDate Measurement date is the earliest available date from the cancer pathway. DATE FIRST SEEN, DATE FIRST SEEN (CANCER SPECIALIST), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT), TNM STAGE GROUPING DATE (INTEGRATED)

-- Query to extract Adult Comorbidity Evaluation - 27 Score for CT cancer area from COSD v9.
-- AdultComorbidityEvaluation27Score is a categorical code (0-3, 9) from the ACE-27 assessment tool.
-- MeasurementDate is the earliest available date from referral, specialist, diagnosis, and staging dates.
-- AdultComorbidityEvaluation27Score will be mapped to a measurement value concept in OMOP in a later step.
with CT as (
    select
        Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
        Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeenCancerSpecialist' as DateFirstSeenCancerSpecialist,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage' as StageDateFinalPretreatmentStage,
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage' as StageDateIntegratedStage,
        Record ->> '$."CancerCarePlan"."AdultComorbidityEvaluation-27Score"."@code"' as AdultComorbidityEvaluation27Score,
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber
    from omop_staging.cosd_staging_901
    where type = 'CT'
)
select distinct
    NhsNumber,
    AdultComorbidityEvaluation27Score,
    least(
        cast(DateFirstSeen as date),
        cast(DateFirstSeenCancerSpecialist as date),
        cast(DateOfPrimaryDiagnosisClinicallyAgreed as date),
        cast(StageDateFinalPretreatmentStage as date),
        cast(nullif(StageDateIntegratedStage, '') as date)
    ) as MeasurementDate
from CT
where AdultComorbidityEvaluation27Score is not null
  and not (
      DateFirstSeen is null and
      DateFirstSeenCancerSpecialist is null and
      DateOfPrimaryDiagnosisClinicallyAgreed is null and
      StageDateFinalPretreatmentStage is null and
      StageDateIntegratedStage is null
  );

Comment or raise an issue for this mapping.

COSD V8 CT Measurement Tumour Laterality

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Tumour Laterality for CT (CTYA) cancer area from COSD v8.
-- TumourLaterality is a categorical code (L, R, M, B) identifying the side of the body for the tumour.
-- MeasurementDate uses primary diagnosis date, falling back to non-primary diagnosis date.
-- TumourLaterality will be mapped to a measurement value concept in OMOP in a later step.
-- Only valid laterality codes (L, R, M, B) are included; codes 8 (Not Applicable) and 9 (Not Known) are excluded.
with CT as (
    select
        Record ->> '$.CTYA.CTYACore.CTYACoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.CTYA.CTYACore.CTYACoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.CTYA.CTYACore.CTYACoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        Record ->> '$.CTYA.CTYACore.CTYACoreLinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
    from omop_staging.cosd_staging_81
    where type = 'CT'
)
select distinct
    NhsNumber,
    coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
    TumourLaterality
from CT
where TumourLaterality is not null
  and TumourLaterality in ('L','R','M','B');
	

Comment or raise an issue for this mapping.

COSD V8 CT Measurement TNM Stage Grouping Integrated

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract TNM Stage Grouping (Integrated) for CT (CTYA) cancer area from COSD v8.
-- The TNM stage grouping classifies the combination of T, N, and M categories into stage groupings after treatment and/or after all available evidence.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- TNMStageGroupingIntegrated will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.CTYA.CTYACore.CTYACoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.CTYA.CTYACore.CTYACoreStaging.IntegratedStageTNMStageGroupingDate',
        Record ->> '$.CTYA.CTYACore.CTYACoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis'
    ) as MeasurementDate,
    Record ->> '$.CTYA.CTYACore.CTYACoreStaging.IntegratedStageTNMStageGrouping' as TNMStageGroupingIntegrated
from omop_staging.cosd_staging_81
where type = 'CT'
  and TNMStageGroupingIntegrated is not null;
	

Comment or raise an issue for this mapping.

COSD V8 CT Measurement TNM Stage Grouping Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract TNM Stage Grouping (Final Pretreatment) for CT (CTYA) cancer area from COSD v8.
-- The TNM stage grouping classifies the combination of T, N, and M categories into stage groupings before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- TNMStageGroupingFinalPreTreatment will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.CTYA.CTYACore.CTYACoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.CTYA.CTYACore.CTYACoreStaging.FinalPreTreatmentTNMStageGroupingDate',
        Record ->> '$.CTYA.CTYACore.CTYACoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis'
    ) as MeasurementDate,
    Record ->> '$.CTYA.CTYACore.CTYACoreStaging.FinalPreTreatmentTNMStageGrouping' as TNMStageGroupingFinalPreTreatment
from omop_staging.cosd_staging_81
where type = 'CT'
  and TNMStageGroupingFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V8 CT Measurement Tcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract T Category (Integrated Stage) for CT (CTYA) cancer area from COSD v8.
-- The T category classifies the size and extent of the primary tumour after treatment and/or after all available evidence.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- TcategoryIntegratedStage will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.CTYA.CTYACore.CTYACoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.CTYA.CTYACore.CTYACoreStaging.IntegratedStageTNMStageGroupingDate',
        Record ->> '$.CTYA.CTYACore.CTYACoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis'
    ) as MeasurementDate,
    Record ->> '$.CTYA.CTYACore.CTYACoreStaging.IntegratedStageTCategory' as TcategoryIntegratedStage
from omop_staging.cosd_staging_81
where type = 'CT'
  and TcategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V8 CT Measurement Tcategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract T Category (Final Pretreatment) for CT (CTYA) cancer area from COSD v8.
-- The T category classifies the size and extent of the primary tumour before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- TcategoryFinalPreTreatment will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.CTYA.CTYACore.CTYACoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.CTYA.CTYACore.CTYACoreStaging.FinalPreTreatmentTNMStageGroupingDate',
        Record ->> '$.CTYA.CTYACore.CTYACoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis'
    ) as MeasurementDate,
    Record ->> '$.CTYA.CTYACore.CTYACoreStaging.FinalPreTreatmentTCategory' as TcategoryFinalPreTreatment
from omop_staging.cosd_staging_81
where type = 'CT'
  and TcategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V8 CT Measurement Primary Pathway Metastatic Site

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Metastatic Site (Primary Pathway/Diagnosis) for CT (CTYA) cancer area from COSD v8.
-- MetastaticSite is a repeating field so unnest is used to normalise each site into its own row.
-- Code 97 (Not Applicable - Disease not spread) is excluded.
-- MetastaticSite will be mapped to a measurement value concept in OMOP in a later step.
with CT as (
    select distinct
        Record ->> '$.CTYA.CTYACore.CTYACoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.CTYA.CTYACore.CTYACoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        unnest(
            [
                [ Record ->> '$.CTYA.CTYACore.CTYACoreDiagnosis.MetastaticSite.@code' ],
                Record ->> '$.CTYA.CTYACore.CTYACoreDiagnosis.MetastaticSite[*].@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_81
    where type = 'CT'
)
select distinct
    NhsNumber,
    ClinicalDateCancerDiagnosis,
    MetastaticSite
from CT
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V8 CT Measurement Ncategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract N Category (Integrated Stage) for CT (CTYA) cancer area from COSD v8.
-- The N category classifies the absence or presence and extent of regional lymph node metastases after treatment and/or after all available evidence.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- NcategoryIntegratedStage will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.CTYA.CTYACore.CTYACoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.CTYA.CTYACore.CTYACoreStaging.IntegratedStageTNMStageGroupingDate',
        Record ->> '$.CTYA.CTYACore.CTYACoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis'
    ) as MeasurementDate,
    Record ->> '$.CTYA.CTYACore.CTYACoreStaging.IntegratedStageNCategory' as NcategoryIntegratedStage
from omop_staging.cosd_staging_81
where type = 'CT'
  and NcategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V8 CT Measurement Ncategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract N Category (Final Pretreatment) for CT (CTYA) cancer area from COSD v8.
-- The N category classifies the absence or presence and extent of regional lymph node metastases before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- NcategoryFinalPreTreatment will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.CTYA.CTYACore.CTYACoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.CTYA.CTYACore.CTYACoreStaging.FinalPreTreatmentTNMStageGroupingDate',
        Record ->> '$.CTYA.CTYACore.CTYACoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis'
    ) as MeasurementDate,
    Record ->> '$.CTYA.CTYACore.CTYACoreStaging.FinalPreTreatmentNCategory' as NcategoryFinalPreTreatment
from omop_staging.cosd_staging_81
where type = 'CT'
  and NcategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V8 CT Measurement Mcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract M Category (Integrated Stage) for CT (CTYA) cancer area from COSD v8.
-- The M category classifies the absence or presence of distant metastases after treatment and/or after all available evidence.
-- MeasurementDate falls back to diagnosis date if the integrated staging date is unavailable.
-- McategoryIntegratedStage will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.CTYA.CTYACore.CTYACoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.CTYA.CTYACore.CTYACoreStaging.IntegratedStageTNMStageGroupingDate',
        Record ->> '$.CTYA.CTYACore.CTYACoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis'
    ) as MeasurementDate,
    Record ->> '$.CTYA.CTYACore.CTYACoreStaging.IntegratedStageMCategory' as McategoryIntegratedStage
from omop_staging.cosd_staging_81
where type = 'CT'
  and McategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V8 CT Measurement Mcategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract M Category (Final Pretreatment) for CT (CTYA) cancer area from COSD v8.
-- The M category classifies the absence or presence of distant metastases before treatment.
-- MeasurementDate falls back to diagnosis date if the staging date is unavailable.
-- McategoryFinalPreTreatment will be mapped to a measurement concept in OMOP in a later step.
select distinct
    Record ->> '$.CTYA.CTYACore.CTYACoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.CTYA.CTYACore.CTYACoreStaging.FinalPreTreatmentTNMStageGroupingDate',
        Record ->> '$.CTYA.CTYACore.CTYACoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis'
    ) as MeasurementDate,
    Record ->> '$.CTYA.CTYACore.CTYACoreStaging.FinalPreTreatmentMCategory' as McategoryFinalPreTreatment
from omop_staging.cosd_staging_81
where type = 'CT'
  and McategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V8 CT Measurement Lactate Dehydrogenase Level Peak At Diagnosis

Source column MeasurementDate. Converts text to dates.

• MeasurementDate DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Lactate Dehydrogenase Level (Peak at Diagnosis) for CT (CTYA) cancer area from COSD v8.
-- LactateDehydrogenaseLevelPeakAtDiagnosis is a numeric lab value (max n6) representing peak LDH at diagnosis in U/L.
-- MeasurementDate uses the primary diagnosis date.
-- LactateDehydrogenaseLevelPeakAtDiagnosis will be stored as value_as_number in OMOP in a later step, with unit U/L.
select distinct
    Record ->> '$.CTYA.CTYACore.CTYACoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.CTYA.CTYACore.CTYACoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as MeasurementDate,
    Record ->> '$.CTYA.CTYACore.CTYACoreLaboratoryResultsGeneral.LactateDehydrogenaseLevelPeakAtDiagnosis.@value' as LactateDehydrogenaseLevelPeakAtDiagnosis
from omop_staging.cosd_staging_81
where type = 'CT'
  and LactateDehydrogenaseLevelPeakAtDiagnosis is not null;
	

Comment or raise an issue for this mapping.

COSD V8 CT Measurement Lactate Dehydrogenase Level Normal Upper Limit

Source column MeasurementDate. Converts text to dates.

• MeasurementDate DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Lactate Dehydrogenase Level (Normal Upper Limit) for CT (CTYA) cancer area from COSD v8.
-- LactateDehydrogenaseLevelNormalUpperLimit is a numeric lab value (max n6) representing the upper limit of normal LDH in U/L.
-- MeasurementDate uses the primary diagnosis date.
-- LactateDehydrogenaseLevelNormalUpperLimit will be stored as value_as_number in OMOP in a later step, with unit U/L.
select distinct
    Record ->> '$.CTYA.CTYACore.CTYACoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.CTYA.CTYACore.CTYACoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as MeasurementDate,
    Record ->> '$.CTYA.CTYACore.CTYACoreLaboratoryResultsGeneral.LactateDehydrogenaseLevelNormalUpperLimit.@value' as LactateDehydrogenaseLevelNormalUpperLimit
from omop_staging.cosd_staging_81
where type = 'CT'
  and LactateDehydrogenaseLevelNormalUpperLimit is not null;
	

Comment or raise an issue for this mapping.

COSD V8 CT Measurement Grade Of Differentiation

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

-- Query to extract Grade of Differentiation (At Diagnosis) for CT (CTYA) cancer area from COSD v8.
-- GradeOfDifferentiation is a categorical code (G1-G4, GX) describing tumour differentiation.
-- MeasurementDate uses primary diagnosis date, falling back to non-primary diagnosis date.
-- GradeOfDifferentiation will be mapped to a measurement value concept in OMOP in a later step.
with CT as (
    select
        Record ->> '$.CTYA.CTYACore.CTYACoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.CTYA.CTYACore.CTYACoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.CTYA.CTYACore.CTYACoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        Record ->> '$.CTYA.CTYACore.CTYACoreDiagnosis.DiagnosisGradeOfDifferentiation.@code' as GradeOfDifferentiationAtDiagnosis
    from omop_staging.cosd_staging_81
    where type = 'CT'
)
select distinct
    NhsNumber,
    coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
    GradeOfDifferentiationAtDiagnosis
from CT
where GradeOfDifferentiationAtDiagnosis is not null;
	

Comment or raise an issue for this mapping.

COSD V8 CT Measurement Adult Comorbidity Evaluation

• Value copied from MeasurementDate

• MeasurementDate Measurement date is the earliest available date from referral, specialist first seen, diagnosis, staging, treatment start, or procedure date. DATE FIRST SEEN, DATE FIRST SEEN (CANCER SPECIALIST), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT), TREATMENT START DATE (CANCER), PROCEDURE DATE

-- Query to extract Adult Comorbidity Evaluation for CT (CTYA) cancer area from COSD v8.
-- AdultComorbidityEvaluation is a categorical code (0-3, 9) from the ACE-27 assessment tool.
-- MeasurementDate is the earliest available date from referral, specialist, diagnosis, staging, treatment, or procedure dates.
-- AdultComorbidityEvaluation will be mapped to a measurement value concept in OMOP in a later step.
with CT as (
    select
        Record ->> '$.CTYA.CTYACore.CTYACoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.CTYA.CTYACore.CTYACoreReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
        Record ->> '$.CTYA.CTYACore.CTYACoreReferralAndFirstStageOfPatientPathway.SpecialistDateFirstSeen' as SpecialistDateFirstSeen,
        Record ->> '$.CTYA.CTYACore.CTYACoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.CTYA.CTYACore.CTYACoreStaging.IntegratedStageTNMStageGroupingDate' as IntegratedStageTNMStageGroupingDate,
        Record ->> '$.CTYA.CTYACore.CTYACoreStaging.FinalPreTreatmentTNMStageGroupingDate' as FinalPreTreatmentTNMStageGroupingDate,
        Record ->> '$.CTYA.CTYACore.CTYACoreTreatment.CancerTreatmentStartDate' as CancerTreatmentStartDate,
        Record ->> '$.CTYA.CTYACore.CTYACoreTreatment.CTYACoreSurgeryAndOtherProcedures.ProcedureDate' as ProcedureDate,
        Record ->> '$.CTYA.CTYACore.CTYACoreCancerCarePlan.AdultComorbidityEvaluation.@code' as AdultComorbidityEvaluation
    from omop_staging.cosd_staging_81
    where type = 'CT'
)
select distinct
    NhsNumber,
    AdultComorbidityEvaluation,
    least(
        cast(DateFirstSeen as date),
        cast(SpecialistDateFirstSeen as date),
        cast(ClinicalDateCancerDiagnosis as date),
        cast(IntegratedStageTNMStageGroupingDate as date),
        cast(FinalPreTreatmentTNMStageGroupingDate as date),
        cast(CancerTreatmentStartDate as date),
        cast(ProcedureDate as date)
    ) as MeasurementDate
from CT
where AdultComorbidityEvaluation is not null
  and not (
      DateFirstSeen is null and
      SpecialistDateFirstSeen is null and
      ClinicalDateCancerDiagnosis is null and
      IntegratedStageTNMStageGroupingDate is null and
      FinalPreTreatmentTNMStageGroupingDate is null and
      CancerTreatmentStartDate is null and
      ProcedureDate is null
  );

Comment or raise an issue for this mapping.

COSD v9 CR Measurement TNM Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingIntegrated' as TnmStageGroupingIntegrated
from omop_staging.cosd_staging_901
where type = 'CR'
  and TnmStageGroupingIntegrated is not null;
	

Comment or raise an issue for this mapping.

COSD v9 CR Measurement TNM Category Final Pretreatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingFinalPretreatment' as TnmStageGroupingFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'CR'
  and TnmStageGroupingFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD v9 CR Measurement Tcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryIntegratedStage' as TCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'CR'
  and TCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD v9 CR Measurement Tcategory Final Pretreatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryFinalPretreatment' as TCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'CR'
  and TCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD v9 CR Measurement Primary Pathway Metastasis

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with cr as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis.MetastaticSite.@code' ],
                Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'CR'
)
select distinct
    NhsNumber,
    DateOfPrimaryDiagnosisClinicallyAgreed,
    MetastaticSite
from cr
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD v9 CR Measurement Non Primary Pathway Recurrence Metastasis

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with cr as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence.MetastaticSite.@code' ],
                Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'CR'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from cr
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD v9 CR Measurement Non Primary Pathway Progression Metastasis

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with cr as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression.MetastaticSite.@code' ],
                Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'CR'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from cr
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD v9 CR Measurement Ncategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryIntegratedStage' as NCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'CR'
  and NCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD v9 CR Measurement Ncategory Final Pretreatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryFinalPretreatment' as NCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'CR'
  and NCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD v9 CR Measurement Mcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.MCategoryIntegratedStage' as MCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'CR'
  and MCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD v9 CR Measurement Mcategory Final Pretreatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.MCategoryFinalPretreatment' as MCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'CR'
  and MCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD v9 CR Measurement Grade Of Differentiation

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
    Record ->> '$.PrimaryPathway.Diagnosis.GradeOfDifferentiationAtDiagnosis.@code' as GradeOfDifferentiationAtDiagnosis
from omop_staging.cosd_staging_901
where type = 'CR'
  and GradeOfDifferentiationAtDiagnosis is not null;
	

Comment or raise an issue for this mapping.

COSD v9 CR Measurement Adult Comorbidity Evaluation

• Value copied from MeasurementDate

• MeasurementDate Measurement date is the earliest available date from the patient pathway. DATE FIRST SEEN, DATE FIRST SEEN (CANCER SPECIALIST), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT), TNM STAGE GROUPING DATE (INTEGRATED), TREATMENT START DATE (CANCER), PROCEDURE DATE

with cr as (
	select
		Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
		Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeenCancerSpecialist' as DateFirstSeenCancerSpecialist,
		Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
		Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage' as StageDateFinalPretreatmentStage,
		Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage' as StageDateIntegratedStage,
		coalesce(Record ->> '$.Treatment[0].TreatmentStartDateCancer', Record ->> '$.Treatment.TreatmentStartDateCancer') as TreatmentStartDateCancer,
		coalesce(Record ->> '$.Treatment[0].Surgery.ProcedureDate', Record ->> '$.Treatment.Surgery.ProcedureDate') as ProcedureDate,
		Record ->> '$."CancerCarePlan"."AdultComorbidityEvaluation-27Score"."@code"' as AdultComorbidityEvaluation,
		Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber
	from omop_staging.cosd_staging_901
	where type = 'CR'
)
select
	distinct
		AdultComorbidityEvaluation,
		NhsNumber,
		least(
			cast(DateFirstSeen as date),
			cast(DateFirstSeenCancerSpecialist as date),
			cast(DateOfPrimaryDiagnosisClinicallyAgreed as date),
			cast(StageDateFinalPretreatmentStage as date),
			cast(nullif(StageDateIntegratedStage, '') as date),
			cast(TreatmentStartDateCancer as date),
			cast(ProcedureDate as date)
		) as MeasurementDate
from cr
where AdultComorbidityEvaluation is not null
  and not (
		DateFirstSeen is null and
		DateFirstSeenCancerSpecialist is null and
		DateOfPrimaryDiagnosisClinicallyAgreed is null and
		StageDateFinalPretreatmentStage is null and
		StageDateIntegratedStage is null and
		TreatmentStartDateCancer is null and
		ProcedureDate is null
    );

Comment or raise an issue for this mapping.

COSD V8 CR Measurement Tumour Laterality

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with cr as (
    select
        Record ->> '$.Core.CoreCore.CoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Core.CoreCore.CoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Core.CoreCore.CoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        Record ->> '$.Core.CoreCore.CoreLinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
    from omop_staging.cosd_staging_81
    where type = 'CR'
)
select distinct
    NhsNumber,
    coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
    TumourLaterality
from cr
where TumourLaterality is not null
  and TumourLaterality in ('L','R','M','B');
	

Comment or raise an issue for this mapping.

COSD V8 CR Measurement TNM Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with cr as (
    select
        Record ->> '$.Core.CoreCore.CoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Core.CoreCore.CoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Core.CoreCore.CoreStaging.IntegratedStageTNMStageGrouping' as TnmStageGroupingIntegrated,
        Record ->> '$.Core.CoreCore.CoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where type = 'CR'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TnmStageGroupingIntegrated
from cr
where TnmStageGroupingIntegrated is not null;
	

Comment or raise an issue for this mapping.

COSD V8 CR Measurement TNM Category Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with cr as (
    select
        Record ->> '$.Core.CoreCore.CoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Core.CoreCore.CoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Core.CoreCore.CoreStaging.FinalPreTreatmentTNMStageGrouping' as TnmStageGroupingFinalPretreatment,
        Record ->> '$.Core.CoreCore.CoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
    from omop_staging.cosd_staging_81
    where type = 'CR'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TnmStageGroupingFinalPretreatment
from cr
where TnmStageGroupingFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V8 CR Measurement Tcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with cr as (
    select
        Record ->> '$.Core.CoreCore.CoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Core.CoreCore.CoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Core.CoreCore.CoreStaging.IntegratedStageTCategory' as TCategoryIntegratedStage,
        Record ->> '$.Core.CoreCore.CoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where type = 'CR'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TCategoryIntegratedStage
from cr
where TCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V8 CR Measurement Tcategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with cr as (
    select
        Record ->> '$.Core.CoreCore.CoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Core.CoreCore.CoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Core.CoreCore.CoreStaging.FinalPreTreatmentTCategory' as TcategoryFinalPreTreatment,
        Record ->> '$.Core.CoreCore.CoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
    from omop_staging.cosd_staging_81
    where type = 'CR'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TcategoryFinalPreTreatment
from cr
where TcategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V8 CR Measurement Primary Pathway Metastasis

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with cr as (
    select
        Record ->> '$.Core.CoreCore.CoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Core.CoreCore.CoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        unnest(
            [
                [Record ->> '$.Core.CoreCore.CoreDiagnosis.MetastaticSite.@code'],
                Record ->> '$.Core.CoreCore.CoreDiagnosis.MetastaticSite[*].@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_81
    where type = 'CR'
)
select distinct
    NhsNumber,
    ClinicalDateCancerDiagnosis,
    MetastaticSite
from cr
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V8 CR Measurement Non Primary Pathway Metastasis

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.Core.CoreCore.CoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.Core.CoreCore.CoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    Record ->> '$.Core.CoreCore.CoreNonPrimaryCancerPathwayRoute.MetastaticSite.@code' as MetastaticSite
from omop_staging.cosd_staging_81
where type = 'CR'
  and MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V8 CR Measurement Ncategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with cr as (
    select
        Record ->> '$.Core.CoreCore.CoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Core.CoreCore.CoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Core.CoreCore.CoreStaging.IntegratedStageNCategory' as NCategoryIntegratedStage,
        Record ->> '$.Core.CoreCore.CoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where type = 'CR'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    NCategoryIntegratedStage
from cr
where NCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V8 CR Measurement Ncategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with cr as (
    select
        Record ->> '$.Core.CoreCore.CoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Core.CoreCore.CoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Core.CoreCore.CoreStaging.FinalPreTreatmentNCategory' as NcategoryFinalPreTreatment,
        Record ->> '$.Core.CoreCore.CoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
    from omop_staging.cosd_staging_81
    where type = 'CR'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    NcategoryFinalPreTreatment
from cr
where NcategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V8 CR Measurement Mcategory Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (INTEGRATED), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with cr as (
    select
        Record ->> '$.Core.CoreCore.CoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Core.CoreCore.CoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Core.CoreCore.CoreStaging.IntegratedStageMCategory' as MCategoryIntegratedStage,
        Record ->> '$.Core.CoreCore.CoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where type = 'CR'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    MCategoryIntegratedStage
from cr
where MCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V8 CR Measurement Mcategory Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with cr as (
    select
        Record ->> '$.Core.CoreCore.CoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Core.CoreCore.CoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Core.CoreCore.CoreStaging.FinalPreTreatmentMCategory' as McategoryFinalPreTreatment,
        Record ->> '$.Core.CoreCore.CoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
    from omop_staging.cosd_staging_81
    where type = 'CR'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    McategoryFinalPreTreatment
from cr
where McategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V8 CR Measurement Grade Of Differentiation

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with cr as (
    select
        Record ->> '$.Core.CoreCore.CoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Core.CoreCore.CoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Core.CoreCore.CoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        Record ->> '$.Core.CoreCore.CoreDiagnosis.DiagnosisGradeOfDifferentiation.@code' as GradeOfDifferentiationAtDiagnosis
    from omop_staging.cosd_staging_81
    where type = 'CR'
)
select distinct
    NhsNumber,
    coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
    GradeOfDifferentiationAtDiagnosis
from cr
where GradeOfDifferentiationAtDiagnosis is not null;
	

Comment or raise an issue for this mapping.

COSD V8 CR Measurement Adult Comorbidity Evaluation

• Value copied from MeasurementDate

• MeasurementDate Measurement date is the earliest available date from the patient pathway. DATE FIRST SEEN, DATE FIRST SEEN (CANCER SPECIALIST), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT), TREATMENT START DATE (CANCER), PROCEDURE DATE

with cr as (
	select
		Record ->> '$.Core.CoreCore.CoreReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
		Record ->> '$.Core.CoreCore.CoreReferralAndFirstStageOfPatientPathway.SpecialistDateFirstSeen' as SpecialistDateFirstSeen,
		Record ->> '$.Core.CoreCore.CoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
		Record ->> '$.Core.CoreCore.CoreStaging.IntegratedStageTNMStageGroupingDate' as IntegratedStageTNMStageGroupingDate,
		Record ->> '$.Core.CoreCore.CoreStaging.FinalPreTreatmentTNMStageGroupingDate' as FinalPreTreatmentTNMStageGroupingDate,
		Record ->> '$.Core.CoreCore.CoreTreatment.CancerTreatmentStartDate' as CancerTreatmentStartDate,
		Record ->> '$.Core.CoreCore.CoreTreatment.CoreSurgeryAndOtherProcedures.ProcedureDate' as ProcedureDate,
		Record ->> '$.Core.CoreCore.CoreCancerPlan.AdultComorbidityEvaluation.@code' as AdultComorbidityEvaluation,
		Record ->> '$.Core.CoreCore.CoreLinkagePatientId.NHSNumber.@extension' as NhsNumber
	from omop_staging.cosd_staging_81
	where type = 'CR'
)
select
      distinct
          AdultComorbidityEvaluation,
          NhsNumber,
          least(
                cast(DateFirstSeen as date),
                cast(SpecialistDateFirstSeen as date),
                cast(ClinicalDateCancerDiagnosis as date),
                cast(IntegratedStageTNMStageGroupingDate as date),
                cast(FinalPreTreatmentTNMStageGroupingDate as date),
                cast(CancerTreatmentStartDate as date),
                cast(ProcedureDate as date)
              ) as MeasurementDate
from cr
where AdultComorbidityEvaluation is not null
  and not (
		DateFirstSeen is null and
		SpecialistDateFirstSeen is null and
		ClinicalDateCancerDiagnosis is null and
		IntegratedStageTNMStageGroupingDate is null and
		FinalPreTreatmentTNMStageGroupingDate is null and
		CancerTreatmentStartDate is null and
		ProcedureDate is null
    );

Comment or raise an issue for this mapping.

COSD V9 Measurement Tumour Laterality

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select 
	distinct
	    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
	    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
	    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
from omop_staging.cosd_staging_901
where type = 'CO'
  and (Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.TumourLaterality.@code') in ('L','R','M','B');
	

Comment or raise an issue for this mapping.

COSD V9 Measurement TNM Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingIntegrated' as TnmStageGroupingIntegrated
from omop_staging.cosd_staging_901
where type = 'CO'
  and TnmStageGroupingIntegrated is not null;
	

Comment or raise an issue for this mapping.

COSD V9 Measurement TNM Category Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

select 
  distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingFinalPretreatment' as TnmStageGroupingFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'CO'
  and TnmStageGroupingFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 Measurement T Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

select 
  distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryIntegratedStage' as TCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'CO'
  and TCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 Measurement T Category Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

select 
  distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryFinalPretreatment' as TcategoryFinalPreTreatment
from omop_staging.cosd_staging_901
where type = 'CO'
  and TcategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 Measurement Synchronous Tumour Indicator

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select 
	distinct
	    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
	    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
	    Record ->> '$.PrimaryPathway.Diagnosis.DiagnosisColorectal.SynchronousTumourIndicator.@code' as SynchronousTumourIndicator
from omop_staging.cosd_staging_901
where type = 'CO'
  and SynchronousTumourIndicator is not null;
	

Comment or raise an issue for this mapping.

COSD V9 Measurement Primary Pathway Metastasis

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with CO as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis.MetastaticSite.@code' ],
                Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'CO'
)
select distinct
    NhsNumber,
    DateOfPrimaryDiagnosisClinicallyAgreed,
    MetastaticSite
from CO
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 Measurement Non Primary Pathway Recurrence Metastasis

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with CO as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence.MetastaticSite.@code' ],
                Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'CO'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from CO
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 Measurement Non Primary Pathway Progression Metastasis

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with CO as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression.MetastaticSite.@code' ],
                Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'CO'
)
select
    distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from CO
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 Measurement N Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

select 
  distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryIntegratedStage' as NCategoryIntegratedStage
from omop_staging.cosd_staging_901
where type = 'CO'
  and NCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 Measurement N Category Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryFinalPretreatment' as NcategoryFinalPreTreatment
from omop_staging.cosd_staging_901
where type = 'CO'
  and NcategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 Measurement M Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

select 
  distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.MCategoryIntegratedStage' as MCategoryIntegratedStage
from omop_staging.cosd_staging_901
where Type = 'CO'
  and MCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 Measurement M Category Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

select 
  distinct
    record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    record ->> '$.PrimaryPathway.Staging.MCategoryFinalPretreatment' as McategoryFinalPreTreatment
from omop_staging.cosd_staging_901
where type = 'CO'
  and McategoryFinalPreTreatment is not null
	

Comment or raise an issue for this mapping.

COSD V9 Measurement Grade of Differentiation (At Diagnosis)

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select
    distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        Record ->> '$.PrimaryPathway.Diagnosis.GradeOfDifferentiationAtDiagnosis.@code' as GradeOfDifferentiationAtDiagnosis,
from omop_staging.cosd_staging_901
where Type = 'CO'
  and GradeOfDifferentiationAtDiagnosis is not null
	

Comment or raise an issue for this mapping.

CosdV9MeasurementAdultComorbidityEvaluation

• Value copied from MeasurementDate

• MeasurementDate Measurement date DATE FIRST SEEN, DATE FIRST SEEN (CANCER SPECIALIST), DIAGNOSIS DATE, TNM STAGE GROUPING DATE (INTEGRATED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT), TREATMENT START DATE (CANCER), PROCEDURE DATE

with CO as (
	select
		Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
		Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeenCancerSpecialist' as DateFirstSeenCancerSpecialist,
		Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
		Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage' as StageDateFinalPretreatmentStage,
		Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage' as StageDateIntegratedStage,
		coalesce(Record ->> '$.Treatment[0].TreatmentStartDateCancer', Record ->> '$.Treatment.TreatmentStartDateCancer') as TreatmentStartDateCancer,
		coalesce(Record ->> '$.Treatment[0].Surgery.ProcedureDate', Record ->> '$.Treatment.Surgery.ProcedureDate') as ProcedureDate,
		Record ->> '$."CancerCarePlan"."AdultComorbidityEvaluation-27Score"."@code"' as AdultComorbidityEvaluation,
		Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber
	from omop_staging.cosd_staging_901
	where type = 'CO'
)
select
	distinct
		AdultComorbidityEvaluation,
		NhsNumber,
		least(
			cast(DateFirstSeen as date),
			cast(DateFirstSeenCancerSpecialist as date),
			cast(DateOfPrimaryDiagnosisClinicallyAgreed as date),
			cast(StageDateFinalPretreatmentStage as date),
			cast(nullif(StageDateIntegratedStage, '') as date),
			cast(TreatmentStartDateCancer as date),
			cast(ProcedureDate as date)
		) as MeasurementDate
from CO o
where o.AdultComorbidityEvaluation is not null
  and not (
		DateFirstSeen is null and
		DateFirstSeenCancerSpecialist is null and
		DateOfPrimaryDiagnosisClinicallyAgreed is null and
		StageDateFinalPretreatmentStage is null and
		StageDateIntegratedStage is null and
		TreatmentStartDateCancer is null and
		ProcedureDate is null
    );

Comment or raise an issue for this mapping.

COSD V8 Measurement Tumour Laterality

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with co as (
    select
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
    from omop_staging.cosd_staging_81
    where Type = 'CO'
)
select distinct
    NhsNumber,
    coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
    TumourLaterality
from co
where TumourLaterality is not null
  and TumourLaterality in ('L','R','M','B');
	

Comment or raise an issue for this mapping.

COSD V8 Measurement Tumour Height Above Anal Verge

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with co as (
    select
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreDiagnosis.ColorectalDiagnosis.TumourHeightAboveAnalVerge.@value' as TumourHeightAboveAnalVerge
    from omop_staging.cosd_staging_81
    where Type = 'CO'
)
select distinct
    NhsNumber,
    ClinicalDateCancerDiagnosis,
    TumourHeightAboveAnalVerge
from co
where TumourHeightAboveAnalVerge is not null;
	

Comment or raise an issue for this mapping.

COSD V8 Measurement TNM Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

with co as (
    select
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreStaging.IntegratedStageTNMStageGrouping' as TnmStageGroupingIntegrated,
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where Type = 'CO'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TnmStageGroupingIntegrated
from co
where TnmStageGroupingIntegrated is not null;
	

Comment or raise an issue for this mapping.

COSD V8 Measurement TNM Category Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

with co as (
    select
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreStaging.FinalPreTreatmentTNMStageGrouping' as TnmStageGroupingFinalPretreatment,
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
    from omop_staging.cosd_staging_81
    where Type = 'CO'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TnmStageGroupingFinalPretreatment
from co
where TnmStageGroupingFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V8 Measurement T Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

with co as (
    select
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreStaging.IntegratedStageTCategory' as TCategoryIntegratedStage,
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where Type = 'CO'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TCategoryIntegratedStage
from co
where TCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V8 Measurement T Category Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

with co as (
    select
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreStaging.FinalPreTreatmentTCategory' as TcategoryFinalPreTreatment,
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
    from omop_staging.cosd_staging_81
    where Type = 'CO'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TcategoryFinalPreTreatment
from co
where TcategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V8 Measurement Synchronous Tumour Indicator

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis The date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with co as (
    select
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreDiagnosis.ColorectalDiagnosis.SynchronousTumourColonLocation.@code' as SynchronousTumourIndicator
    from omop_staging.cosd_staging_81
    where Type = 'CO'
)
select distinct
    NhsNumber,
    ClinicalDateCancerDiagnosis,
    SynchronousTumourIndicator
from co
where SynchronousTumourIndicator is not null;
	

Comment or raise an issue for this mapping.

COSD V8 Measurement Primary Pathway Metastasis

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with co as (
select 
    Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
    unnest(
      [
        [
          Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreDiagnosis.MetastaticSite.@code'
        ], 
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreDiagnosis.MetastaticSite[*].@code'
      ], recursive := true
    ) as MetastaticSite
from omop_staging.cosd_staging_81
where Type = 'CO'
)
select distinct
    NhsNumber,
    ClinicalDateCancerDiagnosis,
    MetastaticSite
from co
where MetastaticSite is not null
  and MetastaticSite != 97;
	

Comment or raise an issue for this mapping.

COSD V8 Measurement Non Primary Pathway Metastasis

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with co as (
    select distinct
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreNonPrimaryCancerPathwayRoute.MetastaticSite.@code' ],
                Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreNonPrimaryCancerPathwayRoute.MetastaticSite[*].@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_81
    where type = 'CO'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from co
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V8 Measurement N Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

with CO as (
	select 
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreStaging.IntegratedStageNCategory' as NCategoryIntegratedStage,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
	from omop_staging.cosd_staging_81
	where Type = 'CO'
)
select distinct
	NhsNumber,
	coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
	NCategoryIntegratedStage
from CO
where NCategoryIntegratedStage is not null;

	

Comment or raise an issue for this mapping.

COSD V8 Measurement N Category Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

with CO as (
	select 
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreStaging.FinalPreTreatmentNCategory' as NcategoryFinalPreTreatment,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
	from omop_staging.cosd_staging_81
	where Type = 'CO'
)
select distinct
	NhsNumber,
	coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
	NcategoryFinalPreTreatment
from CO
where NcategoryFinalPreTreatment is not null;

	

Comment or raise an issue for this mapping.

COSD V8 Measurement M Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

with CO as (
	select 
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreStaging.IntegratedStageMCategory' as MCategoryIntegratedStage,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
	from omop_staging.cosd_staging_81
	where Type = 'CO'
)
select distinct
	NhsNumber,
	coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
	MCategoryIntegratedStage
from CO
where MCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V8 Measurement M Category Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

with CO as (
	select 
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreStaging.FinalPreTreatmentMCategory' as McategoryFinalPreTreatment,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
	from omop_staging.cosd_staging_81
	where Type = 'CO'
)
select distinct
	NhsNumber,
	coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
	McategoryFinalPreTreatment
from CO
where McategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V8 Measurement Grade of Differentiation (At Diagnosis)

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with CO as (
	select 
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreDiagnosis.DiagnosisGradeOfDifferentiation.@code' as GradeOfDifferentiationAtDiagnosis
	from omop_staging.cosd_staging_81
	where Type = 'CO'
)
select distinct
	NhsNumber,
	coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
	GradeOfDifferentiationAtDiagnosis
from CO
where GradeOfDifferentiationAtDiagnosis is not null;
	

Comment or raise an issue for this mapping.

CosdV8MeasurementAdultComorbidityEvaluation

• Value copied from MeasurementDate

• MeasurementDate Measurement date DATE FIRST SEEN, DATE FIRST SEEN (CANCER SPECIALIST), DIAGNOSIS DATE, TNM STAGE GROUPING DATE (INTEGRATED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT), TREATMENT START DATE (CANCER), PROCEDURE DATE

with CO as (
	select 
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreReferralAndFirstStageOfPatientPathway.SpecialistDateFirstSeen' as SpecialistDateFirstSeen,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreStaging.IntegratedStageTNMStageGroupingDate' as IntegratedStageTNMStageGroupingDate,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as FinalPreTreatmentTNMStageGroupingDate,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreTreatment.CancerTreatmentStartDate' as CancerTreatmentStartDate,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreTreatment.ColorectalCoreSurgeryAndOtherProcedures.ProcedureDate' as ProcedureDate,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreCancerCarePlan.AdultComorbidityEvaluation.@code' as AdultComorbidityEvaluation,
		Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber
	from omop_staging.cosd_staging_81
	where Type = 'CO'
)
select
      distinct
          AdultComorbidityEvaluation,
          NhsNumber,
          least(
                cast (DateFirstSeen as date),
                cast (SpecialistDateFirstSeen as date),
                cast (ClinicalDateCancerDiagnosis as date),
                cast (IntegratedStageTNMStageGroupingDate as date),
                cast (FinalPreTreatmentTNMStageGroupingDate as date),
                cast (CancerTreatmentStartDate as date),
                cast (ProcedureDate as date)
              ) as MeasurementDate
from CO o
where o.AdultComorbidityEvaluation is not null
  and not (
		DateFirstSeen is null and
		SpecialistDateFirstSeen is null and
		ClinicalDateCancerDiagnosis is null and
		IntegratedStageTNMStageGroupingDate is null and
		FinalPreTreatmentTNMStageGroupingDate is null and
		CancerTreatmentStartDate is null and
		ProcedureDate is null
    )

Comment or raise an issue for this mapping.

COSD V9 Breast Measurement Tumour Laterality

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed The date the primary cancer diagnosis was clinically agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select 
    distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
from omop_staging.cosd_staging_901
where type = 'BR'
  and (Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.TumourLaterality.@code') in ('L','R','M','B');
	

Comment or raise an issue for this mapping.

COSD V9 Breast Measurement TNM Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate The date of the staging measurement, either the integrated stage date or diagnosis date as fallback. STAGE DATE INTEGRATED STAGE / DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with BR as (
    select 
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        coalesce(
            Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
            Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
        ) as MeasurementDate,
        Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingIntegrated' as TnmStageGroupingIntegrated
    from omop_staging.cosd_staging_901
    where type = 'BR'
)
select distinct
    NhsNumber,
    MeasurementDate,
    TnmStageGroupingIntegrated
from BR
where TnmStageGroupingIntegrated is not null;
	

Comment or raise an issue for this mapping.

COSD V9 Breast Measurement TNM Category Final Pre-Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate The date of the staging measurement, either the stage date or diagnosis date as fallback. STAGE DATE FINAL PRETREATMENT STAGE / DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with BR as (
    select 
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        coalesce(
            Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
            Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
        ) as MeasurementDate,
        Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingFinalPretreatment' as TnmStageGroupingFinalPretreatment
    from omop_staging.cosd_staging_901
    where type = 'BR'
)
select distinct
    NhsNumber,
    MeasurementDate,
    TnmStageGroupingFinalPretreatment
from BR
where TnmStageGroupingFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 Breast Measurement T Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate The date of the staging measurement, either the integrated stage date or diagnosis date as fallback. STAGE DATE INTEGRATED STAGE / DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with BR as (
    select 
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        coalesce(
            Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
            Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
        ) as MeasurementDate,
        Record ->> '$.PrimaryPathway.Staging.TCategoryIntegratedStage' as TCategoryIntegratedStage
    from omop_staging.cosd_staging_901
    where type = 'BR'
)
select distinct
    NhsNumber,
    MeasurementDate,
    TCategoryIntegratedStage
from BR
where TCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 Breast Measurement T Category Final Pre-Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate The date of the staging measurement, either the stage date or diagnosis date as fallback. STAGE DATE FINAL PRETREATMENT STAGE / DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with BR as (
    select 
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        coalesce(
            Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
            Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
        ) as MeasurementDate,
        Record ->> '$.PrimaryPathway.Staging.TCategoryFinalPretreatment' as TcategoryFinalPreTreatment
    from omop_staging.cosd_staging_901
    where type = 'BR'
)
select distinct
    NhsNumber,
    MeasurementDate,
    TcategoryFinalPreTreatment
from BR
where TcategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 Breast Measurement Primary Pathway Metastasis

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with BR as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis.MetastaticSite.@code' ],
                Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'BR'
)
select distinct
    NhsNumber,
    DateOfPrimaryDiagnosisClinicallyAgreed,
    MetastaticSite
from BR
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 Breast Measurement Non Primary Pathway Recurrence Metastasis

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer diagnosis was confirmed or agreed after recurrence. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with BR as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence.MetastaticSite.@code' ],
                Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'BR'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from BR
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 Breast Measurement Non Primary Pathway Progression Metastasis

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer diagnosis was confirmed or agreed after progression. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with BR as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression.MetastaticSite.@code' ],
                Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression[*].MetastaticSite.@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_901
    where type = 'BR'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from BR
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 Breast Measurement N Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

with BR as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        coalesce(
            Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
            Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
        ) as MeasurementDate,
        Record ->> '$.PrimaryPathway.Staging.NCategoryIntegratedStage' as NCategoryIntegratedStage
    from omop_staging.cosd_staging_901
    where type = 'BR'
)
select distinct
    NhsNumber,
    MeasurementDate,
    NCategoryIntegratedStage
from BR
where NCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 Breast Measurement N Category Final Pre-Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final Pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRE-TREATMENT)

with BR as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        coalesce(
            Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
            Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
        ) as MeasurementDate,
        Record ->> '$.PrimaryPathway.Staging.NCategoryFinalPretreatment' as NcategoryFinalPreTreatment
    from omop_staging.cosd_staging_901
    where type = 'BR'
)
select distinct
    NhsNumber,
    MeasurementDate,
    NcategoryFinalPreTreatment
from BR
where NcategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 Breast Measurement M Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

with BR as (
    select 
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        coalesce(
            Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage',
            Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
        ) as MeasurementDate,
        Record ->> '$.PrimaryPathway.Staging.MCategoryIntegratedStage' as MCategoryIntegratedStage
    from omop_staging.cosd_staging_901
    where Type = 'BR'
)
select distinct
    NhsNumber,
    MeasurementDate,
    MCategoryIntegratedStage
from BR
where MCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V9 Breast Measurement M Category Final Pre-Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final Pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRE-TREATMENT)

with BR as (
    select 
        record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        coalesce(
            record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
            record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
        ) as MeasurementDate,
        record ->> '$.PrimaryPathway.Staging.MCategoryFinalPretreatment' as McategoryFinalPreTreatment
    from omop_staging.cosd_staging_901
    where type = 'BR'
)
select distinct
    NhsNumber,
    MeasurementDate,
    McategoryFinalPreTreatment
from BR
where McategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 Breast Measurement Grade of Differentiation

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed The date the primary cancer diagnosis was clinically agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with BR as (
    select
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        Record ->> '$.PrimaryPathway.Diagnosis.GradeOfDifferentiationAtDiagnosis.@code' as GradeOfDifferentiationAtDiagnosis
    from omop_staging.cosd_staging_901
    where Type = 'BR'
)
select distinct
    NhsNumber,
    DateOfPrimaryDiagnosisClinicallyAgreed,
    GradeOfDifferentiationAtDiagnosis
from BR
where GradeOfDifferentiationAtDiagnosis is not null;
	

Comment or raise an issue for this mapping.

CosdV9BreastMeasurementAdultComorbidityEvaluation

• Value copied from MeasurementDate

• MeasurementDate Approximated date from earliest available date field (first seen, diagnosis, staging, or treatment dates) Multiple date sources

with BR as (
    select
        Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
        Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeenCancerSpecialist' as DateFirstSeenCancerSpecialist,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage' as StageDateFinalPretreatmentStage,
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage' as StageDateIntegratedStage,
        coalesce(
            Record ->> '$.Treatment[0].TreatmentStartDateCancer', 
            Record ->> '$.Treatment.TreatmentStartDateCancer'
        ) as TreatmentStartDateCancer,
        coalesce(
            Record ->> '$.Treatment[0].Surgery.ProcedureDate', 
            Record ->> '$.Treatment.Surgery.ProcedureDate'
        ) as ProcedureDate,
        -- Quoting used to handle the hyphen in the field name safely
        Record ->> '$."CancerCarePlan"."AdultComorbidityEvaluation-27Score"."@code"' as AdultComorbidityEvaluation,
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber
    from omop_staging.cosd_staging_901
    where type = 'BR'
)
select
    distinct
        AdultComorbidityEvaluation,
        NhsNumber,
        least(
            cast(DateFirstSeen as date),
            cast(DateFirstSeenCancerSpecialist as date),
            cast(DateOfPrimaryDiagnosisClinicallyAgreed as date),
            cast(StageDateFinalPretreatmentStage as date),
            cast(nullif(StageDateIntegratedStage, '') as date),
            cast(TreatmentStartDateCancer as date),
            cast(ProcedureDate as date)
        ) as MeasurementDate
from BR o
where o.AdultComorbidityEvaluation is not null
  and not (
        DateFirstSeen is null and
        DateFirstSeenCancerSpecialist is null and
        DateOfPrimaryDiagnosisClinicallyAgreed is null and
        StageDateFinalPretreatmentStage is null and
        StageDateIntegratedStage is null and
        TreatmentStartDateCancer is null and
        ProcedureDate is null
    );

Comment or raise an issue for this mapping.

COSD V8 Breast Measurement Tumour Laterality

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the clinical date of cancer diagnosis if available, otherwise the date of non-primary cancer diagnosis clinically agreed. CLINICAL DATE CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON-PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with br as (
    select
        Record ->> '$.Breast.BreastCore.BreastCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Breast.BreastCore.BreastCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Breast.BreastCore.BreastCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        Record ->> '$.Breast.BreastCore.BreastCoreLinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
    from omop_staging.cosd_staging_81
    where Type = 'BR'
)
select distinct
    NhsNumber,
    coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
    TumourLaterality
from br
where TumourLaterality is not null
  and TumourLaterality in ('L','R','M','B');
	

Comment or raise an issue for this mapping.

COSD V8 Breast Measurement TNM Category Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

with br as (
    select
        Record ->> '$.Breast.BreastCore.BreastCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Breast.BreastCore.BreastCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Breast.BreastCore.BreastCoreStaging.FinalPreTreatmentTNMStageGrouping' as TnmStageGroupingFinalPretreatment,
        Record ->> '$.Breast.BreastCore.BreastCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
    from omop_staging.cosd_staging_81
    where Type = 'BR'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TnmStageGroupingFinalPretreatment
from br
where TnmStageGroupingFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V8 Breast Measurement T Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which T Category (Integrated stage) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

with br as (
    select
        Record ->> '$.Breast.BreastCore.BreastCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Breast.BreastCore.BreastCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Breast.BreastCore.BreastCoreStaging.IntegratedStageTCategory' as TCategoryIntegratedStage,
        Record ->> '$.Breast.BreastCore.BreastCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where Type = 'BR'
)
select distinct
    NhsNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TCategoryIntegratedStage
from br
where TCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V8 Breast Measurement T Category Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which T Category (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

with br as (
    select
        Record ->> '$.Breast.BreastCore.BreastCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Breast.BreastCore.BreastCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Breast.BreastCore.BreastCoreStaging.FinalPreTreatmentTCategory' as TcategoryFinalPreTreatment,
        Record ->> '$.Breast.BreastCore.BreastCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
    from omop_staging.cosd_staging_81
    where Type = 'BR'
)
select distinct
    NhsNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    TcategoryFinalPreTreatment
from br
where TcategoryFinalPreTreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V8 Breast Measurement Primary Pathway Metastasis

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis The date on which Primary Cancer Diagnosis was clinically agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with br as (
select 
    Record ->> '$.Breast.BreastCore.BreastCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.Breast.BreastCore.BreastCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
    unnest(
      [
        [
          Record ->> '$.Breast.BreastCore.BreastCoreDiagnosis.MetastaticSite.@code'
        ], 
        Record ->> '$.Breast.BreastCore.BreastCoreDiagnosis.MetastaticSite[*].@code'
      ], recursive := true
    ) as MetastaticSite
from omop_staging.cosd_staging_81
where Type = 'BR'
)
select distinct
    NhsNumber,
    ClinicalDateCancerDiagnosis,
    MetastaticSite
from br
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V8 Breast Measurement Non Primary Pathway Metastasis

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed The date on which Non-Primary Cancer Diagnosis was clinically agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with br as (
    select distinct
        Record ->> '$.Breast.BreastCore.BreastCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.Breast.BreastCore.BreastCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        unnest(
            [
                [ Record ->> '$.Breast.BreastCore.BreastCoreNonPrimaryCancerPathwayRoute.MetastaticSite.@code' ],
                Record ->> '$.Breast.BreastCore.BreastCoreNonPrimaryCancerPathwayRoute.MetastaticSite[*].@code'
            ],
            recursive := true
        ) as MetastaticSite
    from omop_staging.cosd_staging_81
    where type = 'BR'
)
select distinct
    NhsNumber,
    DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    MetastaticSite
from br
where MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V8 Breast Measurement N Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

with BR as (
    select 
        Record ->> '$.Breast.BreastCore.BreastCoreLinkagePatientId.NHSNumber.@extension' as NHSNumber,
        Record ->> '$.Breast.BreastCore.BreastCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Breast.BreastCore.BreastCoreStaging.IntegratedStageNCategory' as NCategoryIntegratedStage,
        Record ->> '$.Breast.BreastCore.BreastCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where Type = 'BR'
)
select distinct
    NHSNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    NCategoryIntegratedStage
from BR
where NCategoryIntegratedStage is not null;
	

Comment or raise an issue for this mapping.

COSD V8 Breast Measurement N Category Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

with BR as (
    select 
        Record ->> '$.Breast.BreastCore.BreastCoreLinkagePatientId.NHSNumber.@extension' as NHSNumber,
        Record ->> '$.Breast.BreastCore.BreastCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Breast.BreastCore.BreastCoreStaging.FinalPreTreatmentNCategory' as NcategoryFinalPreTreatment,
        Record ->> '$.Breast.BreastCore.BreastCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
    from omop_staging.cosd_staging_81
    where Type = 'BR'
)
select distinct
    NHSNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    NcategoryFinalPreTreatment
from BR
where NcategoryFinalPreTreatment is not null
and NHSNumber is not null;
	

Comment or raise an issue for this mapping.

COSD V8 Breast Measurement M Category Integrated Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Integrated) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (INTEGRATED)

with BR as (
    select 
        Record ->> '$.Breast.BreastCore.BreastCoreLinkagePatientId.NHSNumber.@extension' as NHSNumber,
        Record ->> '$.Breast.BreastCore.BreastCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Breast.BreastCore.BreastCoreStaging.IntegratedStageMCategory' as MCategoryIntegratedStage,
        Record ->> '$.Breast.BreastCore.BreastCoreStaging.IntegratedStageTNMStageGroupingDate' as StageDateIntegratedStage
    from omop_staging.cosd_staging_81
    where Type = 'BR'
)
select distinct
    NHSNumber,
    coalesce(StageDateIntegratedStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    MCategoryIntegratedStage
from BR
where MCategoryIntegratedStage is not null
and NHSNumber is not null;
	

Comment or raise an issue for this mapping.

COSD V8 Breast Measurement M Category Final Pre Treatment Stage

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT)

with BR as (
    select 
        Record ->> '$.Breast.BreastCore.BreastCoreLinkagePatientId.NHSNumber.@extension' as NHSNumber,
        Record ->> '$.Breast.BreastCore.BreastCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Breast.BreastCore.BreastCoreStaging.FinalPreTreatmentMCategory' as McategoryFinalPreTreatment,
        Record ->> '$.Breast.BreastCore.BreastCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as StageDateFinalPretreatmentStage
    from omop_staging.cosd_staging_81
    where Type = 'BR'
)
select distinct
    NHSNumber,
    coalesce(StageDateFinalPretreatmentStage, ClinicalDateCancerDiagnosis) as MeasurementDate,
    McategoryFinalPreTreatment
from BR
where McategoryFinalPreTreatment is not null
and NHSNumber is not null;
	

Comment or raise an issue for this mapping.

COSD V8 Breast Measurement Grade of Differentiation (At Diagnosis)

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with BR as (
    select 
        Record ->> '$.Breast.BreastCore.BreastCoreLinkagePatientId.NHSNumber.@extension' as NHSNumber,
        Record ->> '$.Breast.BreastCore.BreastCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Breast.BreastCore.BreastCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        Record ->> '$.Breast.BreastCore.BreastCoreDiagnosis.DiagnosisGradeOfDifferentiation.@code' as GradeOfDifferentiationAtDiagnosis
    from omop_staging.cosd_staging_81
    where Type = 'BR'
)
select distinct
    NHSNumber,
    coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
    GradeOfDifferentiationAtDiagnosis
from BR
where GradeOfDifferentiationAtDiagnosis is not null;
	

Comment or raise an issue for this mapping.

CosdV8BreastMeasurementAdultComorbidityEvaluation

• Value copied from MeasurementDate

• MeasurementDate Approximated date from earliest available date field (first seen, diagnosis, staging, or treatment dates) Multiple date sources

with BR as (
    select 
        Record ->> '$.Breast.BreastCore.BreastCoreReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
        Record ->> '$.Breast.BreastCore.BreastCoreReferralAndFirstStageOfPatientPathway.DateFirstSeenCancerSpecialist' as DateFirstSeenCancerSpecialist,
        Record ->> '$.Breast.BreastCore.BreastCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Breast.BreastCore.BreastCoreStaging.IntegratedStageTNMStageGroupingDate' as IntegratedStageTNMStageGroupingDate,
        Record ->> '$.Breast.BreastCore.BreastCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as FinalPreTreatmentTNMStageGroupingDate,
        Record ->> '$.Breast.BreastCore.BreastCoreTreatment.CancerTreatmentStartDate' as CancerTreatmentStartDate,
        Record ->> '$.Breast.BreastCore.BreastCoreTreatment.BreastCoreSurgeryAndOtherProcedures.ProcedureDate' as ProcedureDate,
        Record ->> '$.Breast.BreastCore.BreastCoreCancerCarePlan.AdultComorbidityEvaluation.@code' as AdultComorbidityEvaluation,
        Record ->> '$.Breast.BreastCore.BreastCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber
    from omop_staging.cosd_staging_81
    where Type = 'BR'
)
select
      distinct
          AdultComorbidityEvaluation,
          NhsNumber,
          least(
                cast (DateFirstSeen as date),
                cast (DateFirstSeenCancerSpecialist as date),
                cast (ClinicalDateCancerDiagnosis as date),
                cast (IntegratedStageTNMStageGroupingDate as date),
                cast (FinalPreTreatmentTNMStageGroupingDate as date),
                cast (CancerTreatmentStartDate as date),
                cast (ProcedureDate as date)
              ) as MeasurementDate
from BR o
where o.AdultComorbidityEvaluation is not null
  and not (
        DateFirstSeen is null and
        DateFirstSeenCancerSpecialist is null and
        ClinicalDateCancerDiagnosis is null and
        IntegratedStageTNMStageGroupingDate is null and
        FinalPreTreatmentTNMStageGroupingDate is null and
        CancerTreatmentStartDate is null and
        ProcedureDate is null
    );
	

Comment or raise an issue for this mapping.

COSD V9 BA Measurement Tumour Laterality

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
from omop_staging.cosd_staging_901
where type = 'BA'
  and TumourLaterality in ('L', 'R', 'M', 'B');
	

Comment or raise an issue for this mapping.

COSD V9 BA Measurement Tnm Stage Grouping Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TnmStageGroupingFinalPretreatment' as TnmStageGroupingFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'BA'
  and TnmStageGroupingFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 BA Measurement T Category Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.TCategoryFinalPretreatment' as TCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'BA'
  and TCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 BA Measurement Primary Pathway Metastatic Site

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
    Record ->> '$.PrimaryPathway.Diagnosis.MetastaticTypeAndSiteDiagnosis.MetastaticSite.@code' as MetastaticSite
from omop_staging.cosd_staging_901
where type = 'BA'
  and MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 BA Measurement Non Primary Pathway Recurrence Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    Record ->> '$.NonPrimaryPathway.Recurrence.MetastaticTypeAndSiteRecurrence.MetastaticSite.@code' as MetastaticSite
from omop_staging.cosd_staging_901
where type = 'BA'
  and MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 BA Measurement Non Primary Pathway Progression Metastatic Site

Source column DateOfNonPrimaryCancerDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfNonPrimaryCancerDiagnosisClinicallyAgreed Is the date where the Non Primary Cancer PATIENT DIAGNOSIS was confirmed or agreed. DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.NonPrimaryPathway.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
    Record ->> '$.NonPrimaryPathway.Progression.MetastaticTypeAndSiteProgression.MetastaticSite.@code' as MetastaticSite
from omop_staging.cosd_staging_901
where type = 'BA'
  and MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V9 BA Measurement N Category Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.NCategoryFinalPretreatment' as NCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'BA'
  and NCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 BA Measurement M Category Final Pretreatment

Source column MeasurementDate. Converts text to dates.

• MeasurementDate Measurement Date is the date on which TNM Stage Grouping (Final pre-treatment) was recorded, but if this is not available, then it is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. TNM STAGE GROUPING DATE (FINAL PRETREATMENT), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage',
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed'
    ) as MeasurementDate,
    Record ->> '$.PrimaryPathway.Staging.MCategoryFinalPretreatment' as MCategoryFinalPretreatment
from omop_staging.cosd_staging_901
where type = 'BA'
  and MCategoryFinalPretreatment is not null;
	

Comment or raise an issue for this mapping.

COSD V9 BA Measurement Grade Of Differentiation At Diagnosis

Source column DateOfPrimaryDiagnosisClinicallyAgreed. Converts text to dates.

• DateOfPrimaryDiagnosisClinicallyAgreed DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
    Record ->> '$.PrimaryPathway.Diagnosis.GradeOfDifferentiationAtDiagnosis.@code' as GradeOfDifferentiationAtDiagnosis
from omop_staging.cosd_staging_901
where type = 'BA'
  and GradeOfDifferentiationAtDiagnosis is not null;
	

Comment or raise an issue for this mapping.

COSD V8 BA Measurement Tumour Laterality

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with BA as (
    select
        Record ->> '$.CNS.CNSCore.CNSCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.CNS.CNSCore.CNSCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.CNS.CNSCore.CNSCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        Record ->> '$.CNS.CNSCore.CNSCoreLinkageDiagnosticDetails.TumourLaterality.@code' as TumourLaterality
    from omop_staging.cosd_staging_81
    where type = 'BA'
)
select distinct
    NhsNumber,
    coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
    TumourLaterality
from BA
where TumourLaterality is not null
  and TumourLaterality in ('L', 'R', 'M', 'B');
	

Comment or raise an issue for this mapping.

COSD V8 BA Measurement Metastatic Site

Source column ClinicalDateCancerDiagnosis. Converts text to dates.

• ClinicalDateCancerDiagnosis DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED) is the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

select distinct
    Record ->> '$.CNS.CNSCore.CNSCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.CNS.CNSCore.CNSCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
    Record ->> '$.CNS.CNSCore.CNSCoreDiagnosis.MetastaticSite.@code' as MetastaticSite
from omop_staging.cosd_staging_81
where type = 'BA'
  and MetastaticSite is not null
  and MetastaticSite != '97';
	

Comment or raise an issue for this mapping.

COSD V8 BA Measurement Grade Of Differentiation

Source column MeasurementDate. Converts text to dates.

• MeasurementDate For a Primary Pathway, the date the Primary Cancer was confirmed or the Primary Cancer diagnosis was agreed (DATE OF PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used, whilst for a non-primary pathway, the date where the Non Primary Cancer patient diagnosis was confirmed or agreed (DATE OF NON PRIMARY CANCER DIAGNOSIS - CLINICALLY AGREED) is used. DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), DATE OF NON PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED)

with BA as (
    select
        Record ->> '$.CNS.CNSCore.CNSCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.CNS.CNSCore.CNSCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.CNS.CNSCore.CNSCoreLinkageDiagnosticDetails.DateOfNonPrimaryCancerDiagnosisClinicallyAgreed' as DateOfNonPrimaryCancerDiagnosisClinicallyAgreed,
        Record ->> '$.CNS.CNSCore.CNSCoreDiagnosis.DiagnosisGradeOfDifferentiation.@code' as GradeOfDifferentiationAtDiagnosis
    from omop_staging.cosd_staging_81
    where type = 'BA'
)
select distinct
    NhsNumber,
    coalesce(ClinicalDateCancerDiagnosis, DateOfNonPrimaryCancerDiagnosisClinicallyAgreed) as MeasurementDate,
    GradeOfDifferentiationAtDiagnosis
from BA
where GradeOfDifferentiationAtDiagnosis is not null
  and GradeOfDifferentiationAtDiagnosis != ''
	

Comment or raise an issue for this mapping.

COSD V8 BA Measurement Adult Comorbidity Evaluation

• Value copied from MeasurementDate

• MeasurementDate Measurement date is the earliest available date from referral, specialist first seen, diagnosis, treatment start, or procedure date. DATE FIRST SEEN, DATE FIRST SEEN (CANCER SPECIALIST), DATE OF PRIMARY CANCER DIAGNOSIS (CLINICALLY AGREED), TREATMENT START DATE (CANCER), PROCEDURE DATE

with BA as (
    select
        Record ->> '$.CNS.CNSCore.CNSCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        Record ->> '$.CNS.CNSCore.CNSCoreReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
        Record ->> '$.CNS.CNSCore.CNSCoreReferralAndFirstStageOfPatientPathway.SpecialistDateFirstSeen' as SpecialistDateFirstSeen,
        Record ->> '$.CNS.CNSCore.CNSCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.CNS.CNSCore.CNSCoreTreatment.CancerTreatmentStartDate' as CancerTreatmentStartDate,
        Record ->> '$.CNS.CNSCore.CNSCoreTreatment.CNSCoreSurgeryAndOtherProcedures.ProcedureDate' as ProcedureDate,
        Record ->> '$.CNS.CNSCore.CNSCoreCancerCarePlan.AdultComorbidityEvaluation.@code' as AdultComorbidityEvaluation
    from omop_staging.cosd_staging_81
    where type = 'BA'
)
select distinct
    NhsNumber,
    AdultComorbidityEvaluation,
    least(
        cast(DateFirstSeen as date),
        cast(SpecialistDateFirstSeen as date),
        cast(ClinicalDateCancerDiagnosis as date),
        cast(CancerTreatmentStartDate as date),
        cast(ProcedureDate as date)
    ) as MeasurementDate
from BA
where AdultComorbidityEvaluation is not null
  and not (
      DateFirstSeen is null and
      SpecialistDateFirstSeen is null and
      ClinicalDateCancerDiagnosis is null and
      CancerTreatmentStartDate is null and
      ProcedureDate is null
  );

Comment or raise an issue for this mapping.