procedure_date

SUS Outpatient Procedure Occurrence

Source column AppointmentDate. Converts text to dates.

• AppointmentDate Appointment Date. APPOINTMENT DATE

with results as
(
	select
		distinct
			op.GeneratedRecordIdentifier,
			op.NHSNumber,
			op.AppointmentDate,
			op.AppointmentTime,
			p.ProcedureOPCS as PrimaryProcedure
	from omop_staging.sus_OP op
		inner join omop_staging.sus_OP_OPCSProcedure p
		on op.MessageId = p.MessageId
	where NHSNumber is not null
		and AttendedorDidNotAttend in ('5','6')
)
select *
from results
order by 
	GeneratedRecordIdentifier,
	NHSNumber,
	AppointmentDate, 
	AppointmentTime,
	PrimaryProcedure
	

Comment or raise an issue for this mapping.

SUS CCMDS Procedure Occurrence

Source column ProcedureOccurrenceStartDate. Converts text to dates.

• ProcedureOccurrenceStartDate Start date of the Procedure CRITICAL CARE START DATE

with results as
(
	select 
		distinct
			apc.NHSNumber,
			apc.GeneratedRecordIdentifier,
			cc.CriticalCareStartDate as ProcedureOccurrenceStartDate,
			coalesce(cc.CriticalCareStartTime, '00:00:00') as ProcedureOccurrenceStartTime,
			coalesce(cc.CriticalCarePeriodDischargeDate, cc.EventDate) as ProcedureOccurrenceEndDate,
			coalesce(cc.CriticalCarePeriodDischargeTime, '00:00:00') as ProcedureOccurrenceEndTime,
			d.CriticalCareActivityCode as ProcedureSourceValue
	from omop_staging.sus_CCMDS_CriticalCareActivityCode d
		inner join omop_staging.sus_CCMDS cc 
			on d.MessageId = cc.MessageId
		inner join omop_staging.sus_APC apc 
			on cc.GeneratedRecordID = apc.GeneratedRecordIdentifier
	where apc.NHSNumber is not null
		and d.CriticalCareActivityCode != '99'  -- No Defined Critical Care Activity
)
select *
from results
order by 
	NHSNumber,
	GeneratedRecordIdentifier,
	ProcedureOccurrenceStartDate, 
	ProcedureOccurrenceStartTime,
	ProcedureOccurrenceEndDate,
	ProcedureOccurrenceEndTime,
	ProcedureSourceValue

	

Comment or raise an issue for this mapping.

SUS APC Procedure Occurrence

Source column PrimaryProcedureDate. Converts text to dates.

• PrimaryProcedureDate Procedure Date. PROCEDURE DATE

select
	distinct
		apc.GeneratedRecordIdentifier,
		apc.NHSNumber,
		p.ProcedureDateOPCS as PrimaryProcedureDate,
		p.ProcedureOPCS as PrimaryProcedure
from omop_staging.sus_APC apc
	inner join omop_staging.sus_OPCSProcedure p
		on apc.MessageId = p.MessageId
where NHSNumber is not null
order by
	apc.GeneratedRecordIdentifier,
	apc.NHSNumber,
	p.ProcedureDateOPCS,
	p.ProcedureOPCS
	

Comment or raise an issue for this mapping.

SUS AE Procedure Occurrence

Source column PrimaryProcedureDate. Converts text to dates.

• PrimaryProcedureDate Procedure Date. PROCEDURE DATE

		select
			distinct
				ae.GeneratedRecordIdentifier,
				ae.NHSNumber,
				ae.CDSActivityDate as PrimaryProcedureDate,
				p.AccidentAndEmergencyTreatment as PrimaryProcedure
		from omop_staging.sus_AE ae
			inner join omop_staging.sus_AE_treatment p
				on AE.MessageId = p.MessageId
		where NHSNumber is not null
		order by
			ae.GeneratedRecordIdentifier,
			ae.NHSNumber,
			ae.CDSActivityDate,
			p.AccidentAndEmergencyTreatment
	

Comment or raise an issue for this mapping.

Rtds Procedure Occurrence

Source column event_start_date. Converts text to dates.

• event_start_date Appointment Start Time TREATMENT START DATE (RADIOTHERAPY TREATMENT EPISODE)

with records as (
	select
		PatientSer,
		ProcedureCode,
		ActualStartDateTime_s as Start_date,
		ActualEndDateTime_s as End_date
	from omop_staging.rtds_2a_attendances

	union

	select 
		PatientSer,
		ProcedureCode,
		Start_date,
		End_date
	from omop_staging.rtds_2b_plan
), records_with_patient as (
	select
		(select PatientId from omop_staging.rtds_1_demographics d where d.PatientSer = r.PatientSer limit 1) as PatientId,
		r.*
	from records r
)
select distinct
	PatientId,
	ProcedureCode,
	Start_date as event_start_date,
	End_date as event_end_date
from records_with_patient
where PatientId is not null
	and regexp_matches(patientid, '\d{10}');
	

Comment or raise an issue for this mapping.

Oxford Procedure Occurrence

Source column EventDate. Converts text to dates.

• EventDate Event date

select
	distinct
		d.NHSNumber,
		e.EventDate,
		e.SuppliedCode
from omop_staging.oxford_gp_event e
	inner join omop_staging.oxford_gp_demographic d
		on e.PatientIdentifier = d.PatientIdentifier
order by
	d.NHSNumber,
	e.EventDate,
	e.SuppliedCode
	

Comment or raise an issue for this mapping.

COSD V9 UR Procedure Occurrence Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Same as the ACTIVITY DATE attribute for “Procedure Date”. PROCEDURE DATE

with ur as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        unnest ([[Record ->> '$.Treatment.Surgery.ProcedureDate'], Record ->> '$.Treatment[*].Surgery.ProcedureDate'], recursive := true) as ProcedureDate,
        unnest ([[Record ->> '$.Treatment.Surgery.ProcedureOpcs.@code'], Record ->> '$.Treatment.Surgery.ProcedureOpcs[*].@code', Record ->> '$.Treatment[*].Surgery.ProcedureOpcs[*].@code', Record ->> '$.Treatment[*].Surgery.ProcedureOpcs.@code'], recursive := true) as ProcedureOpcs
    from omop_staging.cosd_staging_901
    where type = 'UR'
)
select distinct
    NhsNumber,
    ProcedureDate,
    ProcedureOpcs
from ur
where NhsNumber is not null
  and ProcedureOpcs is not null;

Comment or raise an issue for this mapping.

COSD V9 UR Procedure Occurrence Primary Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Same as the ACTIVITY DATE attribute for “Procedure Date”. PROCEDURE DATE

with ur as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        unnest ([[Record ->> '$.Treatment.Surgery.ProcedureDate'], Record ->> '$.Treatment[*].Surgery.ProcedureDate'], recursive := true) as ProcedureDate,
        unnest ([[Record ->> '$.Treatment.Surgery.PrimaryProcedureOpcs.@code'], Record ->> '$.Treatment[*].Surgery.PrimaryProcedureOpcs.@code'], recursive := true) as PrimaryProcedureOpcs
    from omop_staging.cosd_staging_901
    where type = 'UR'
)
select distinct
    NhsNumber,
    ProcedureDate,
    PrimaryProcedureOpcs
from ur
where NhsNumber is not null
  and PrimaryProcedureOpcs is not null;

Comment or raise an issue for this mapping.

COSD V9 UR Procedure Occurrence Diagnostic Procedure Snomed Ct

Source column DiagnosticProcedureDate. Converts text to dates.

• DiagnosticProcedureDate Procedure date of the diagnostic procedure. Same as the ACTIVITY DATE attribute for this diagnostic procedure. PROCEDURE DATE (DIAGNOSTIC PROCEDURE)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.DiagnosticProcedures.DiagnosticProcedureDate' as DiagnosticProcedureDate,
    Record ->> '$.DiagnosticProcedures.DiagnosticProcedureSnomedCt.@code' as DiagnosticProcedureSnomedCt
from omop_staging.cosd_staging_901
where type = 'UR'
  and NhsNumber is not null
  and DiagnosticProcedureSnomedCt is not null;

Comment or raise an issue for this mapping.

COSD V9 UR Procedure Occurrence Diagnostic Procedure Opcs

Source column DiagnosticProcedureDate. Converts text to dates.

• DiagnosticProcedureDate Procedure date of the diagnostic procedure. Same as the ACTIVITY DATE attribute for this diagnostic procedure. PROCEDURE DATE (DIAGNOSTIC PROCEDURE)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.DiagnosticProcedures.DiagnosticProcedureDate' as DiagnosticProcedureDate,
    Record ->> '$.DiagnosticProcedures.DiagnosticProcedureOpcs.@code' as DiagnosticProcedureOpcs
from omop_staging.cosd_staging_901
where type = 'UR'
  and NhsNumber is not null
  and DiagnosticProcedureOpcs is not null;

Comment or raise an issue for this mapping.

COSD V8 UR Procedure Occurrence Procedure OPCS

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Same as the ACTIVITY DATE attribute for “Procedure Date”. PROCEDURE DATE

with ur as (
    select distinct
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        unnest ([[Record ->> '$.Urological.UrologicalCore.UrologicalCoreTreatment.UrologicalCoreSurgeryAndOtherProcedures.ProcedureDate'], Record ->> '$.Urological.UrologicalCore.UrologicalCoreTreatment[*].UrologicalCoreSurgeryAndOtherProcedures.ProcedureDate'], recursive := true) as ProcedureDate,
        unnest ([[Record ->> '$.Urological.UrologicalCore.UrologicalCoreTreatment.UrologicalCoreSurgeryAndOtherProcedures.ProcedureOPCS.@code'], Record ->> '$.Urological.UrologicalCore.UrologicalCoreTreatment.UrologicalCoreSurgeryAndOtherProcedures.ProcedureOPCS[*].@code', Record ->> '$.Urological.UrologicalCore.UrologicalCoreTreatment[*].UrologicalCoreSurgeryAndOtherProcedures.ProcedureOPCS[*].@code', Record ->> '$.Urological.UrologicalCore.UrologicalCoreTreatment[*].UrologicalCoreSurgeryAndOtherProcedures.ProcedureOPCS.@code'], recursive := true) as ProcedureOPCS
    from omop_staging.cosd_staging_81
    where type = 'UR'
)
select distinct
    NhsNumber,
    ProcedureDate,
    ProcedureOPCS
from ur
where NhsNumber is not null
  and ProcedureOPCS is not null;

Comment or raise an issue for this mapping.

COSD V8 UR Procedure Occurrence Primary Procedure OPCS

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Same as the ACTIVITY DATE attribute for “Procedure Date”. PROCEDURE DATE

with ur as (
    select distinct
        Record ->> '$.Urological.UrologicalCore.UrologicalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        unnest ([[Record ->> '$.Urological.UrologicalCore.UrologicalCoreTreatment.UrologicalCoreSurgeryAndOtherProcedures.ProcedureDate'], Record ->> '$.Urological.UrologicalCore.UrologicalCoreTreatment[*].UrologicalCoreSurgeryAndOtherProcedures.ProcedureDate'], recursive := true) as ProcedureDate,
        unnest ([[Record ->> '$.Urological.UrologicalCore.UrologicalCoreTreatment.UrologicalCoreSurgeryAndOtherProcedures.PrimaryProcedureOPCS.@code'], Record ->> '$.Urological.UrologicalCore.UrologicalCoreTreatment[*].UrologicalCoreSurgeryAndOtherProcedures.PrimaryProcedureOPCS.@code'], recursive := true) as PrimaryProcedureOPCS
    from omop_staging.cosd_staging_81
    where type = 'UR'
)
select distinct
    NhsNumber,
    ProcedureDate,
    PrimaryProcedureOPCS
from ur
where NhsNumber is not null
  and PrimaryProcedureOPCS is not null;

Comment or raise an issue for this mapping.

COSD V9 UG Procedure Occurrence Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. PROCEDURE DATE

with ug as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,

        unnest ([[Record ->> '$.Treatment.Surgery.ProcedureOpcs.@code'], Record ->> '$.Treatment[*].Surgery.ProcedureOpcs[*].@code'], recursive := true) as ProcedureOpcs,

        unnest ([[Record ->> '$.Treatment.Surgery.ProcedureDate'], Record ->> '$.Treatment[*].Surgery.ProcedureDate'], recursive := true) as ProcedureDate
    from omop_staging.cosd_staging_901
    where type = 'UG'
)
select distinct
    NhsNumber,
    ProcedureOpcs,
    ProcedureDate
from ug
where NhsNumber is not null
  and ProcedureOpcs is not null;

Comment or raise an issue for this mapping.

COSD V9 UG Procedure Occurrence Primary Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. PROCEDURE DATE

with ug as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,

        unnest ([[Record ->> '$.Treatment.Surgery.PrimaryProcedureOpcs.@code'], Record ->> '$.Treatment[*].Surgery.PrimaryProcedureOpcs.@code'], recursive := true) as PrimaryProcedureOpcs,

        unnest ([[Record ->> '$.Treatment.Surgery.ProcedureDate'], Record ->> '$.Treatment[*].Surgery.ProcedureDate'], recursive := true) as ProcedureDate
    from omop_staging.cosd_staging_901
    where type = 'UG'
)
select distinct
    NhsNumber,
    PrimaryProcedureOpcs,
    ProcedureDate
from ug
where NhsNumber is not null
  and PrimaryProcedureOpcs is not null;

Comment or raise an issue for this mapping.

COSD V9 UG Procedure Occurrence Diagnostic Procedure Snomed Ct

Source column DiagnosticProcedureDate. Converts text to dates.

• DiagnosticProcedureDate Procedure date of the diagnostic procedure. PROCEDURE DATE (DIAGNOSTIC PROCEDURE)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,

    Record ->> '$.DiagnosticProcedures.DiagnosticProcedureSnomedCt.@code' as DiagnosticProcedureSnomedCt,

    Record ->> '$.DiagnosticProcedures.DiagnosticProcedureDate' as DiagnosticProcedureDate
from omop_staging.cosd_staging_901
where type = 'UG'
  and NhsNumber is not null
  and DiagnosticProcedureSnomedCt is not null;

Comment or raise an issue for this mapping.

COSD V9 UG Procedure Occurrence Diagnostic Procedure Opcs

Source column DiagnosticProcedureDate. Converts text to dates.

• DiagnosticProcedureDate Procedure date of the diagnostic procedure. PROCEDURE DATE (DIAGNOSTIC PROCEDURE)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,

    Record ->> '$.DiagnosticProcedures.DiagnosticProcedureOpcs.@code' as DiagnosticProcedureOpcs,

    Record ->> '$.DiagnosticProcedures.DiagnosticProcedureDate' as DiagnosticProcedureDate
from omop_staging.cosd_staging_901
where type = 'UG'
  and NhsNumber is not null
  and DiagnosticProcedureOpcs is not null;

Comment or raise an issue for this mapping.

COSD V8 UG Procedure Occurrence Procedure OPCS

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. PROCEDURE DATE

with ug as (
    select distinct
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkagePatientId.NHSNumber.@extension' as NHSNumber,

        unnest ([[Record ->> '$.UpperGI.UpperGICore.UpperGICoreTreatment.UpperGICoreSurgeryAndOtherProcedures.ProcedureOPCS.@code'], Record ->> '$.UpperGI.UpperGICore.UpperGICoreTreatment.UpperGICoreSurgeryAndOtherProcedures.ProcedureOPCS[*].@code'], recursive := true) as ProcedureOPCS,

        unnest ([[Record ->> '$.UpperGI.UpperGICore.UpperGICoreTreatment.UpperGICoreSurgeryAndOtherProcedures.ProcedureDate'], Record ->> '$.UpperGI.UpperGICore.UpperGICoreTreatment[*].UpperGICoreSurgeryAndOtherProcedures.ProcedureDate'], recursive := true) as ProcedureDate
    from omop_staging.cosd_staging_81
    where type = 'UG'
)
select distinct
    NHSNumber,
    ProcedureOPCS,
    ProcedureDate
from ug
where NHSNumber is not null
  and ProcedureOPCS is not null;

Comment or raise an issue for this mapping.

COSD V8 UG Procedure Occurrence Primary Procedure OPCS

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. PROCEDURE DATE

with ug as (
    select distinct
        Record ->> '$.UpperGI.UpperGICore.UpperGICoreLinkagePatientId.NHSNumber.@extension' as NHSNumber,

        unnest ([[Record ->> '$.UpperGI.UpperGICore.UpperGICoreTreatment.UpperGICoreSurgeryAndOtherProcedures.PrimaryProcedureOPCS.@code'], Record ->> '$.UpperGI.UpperGICore.UpperGICoreTreatment[*].UpperGICoreSurgeryAndOtherProcedures.PrimaryProcedureOPCS.@code'], recursive := true) as PrimaryProcedureOPCS,

        unnest ([[Record ->> '$.UpperGI.UpperGICore.UpperGICoreTreatment.UpperGICoreSurgeryAndOtherProcedures.ProcedureDate'], Record ->> '$.UpperGI.UpperGICore.UpperGICoreTreatment[*].UpperGICoreSurgeryAndOtherProcedures.ProcedureDate'], recursive := true) as ProcedureDate
    from omop_staging.cosd_staging_81
    where type = 'UG'
)
select distinct
    NHSNumber,
    PrimaryProcedureOPCS,
    ProcedureDate
from ug
where NHSNumber is not null
  and PrimaryProcedureOPCS is not null;

Comment or raise an issue for this mapping.

COSD V9 SK Procedure Occurrence Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Will be mapped to procedure_date in OMOP. Currently in string format (CCYY-MM-DD) and will be cast to a date type in a later ETL step. PROCEDURE DATE

with COSD as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        unnest ([[Record ->> '$.Treatment.Surgery.ProcedureDate'], Record ->> '$.Treatment[*].Surgery.ProcedureDate'], recursive := true) as ProcedureDate,
        unnest ([[Record ->> '$.Treatment.Surgery.ProcedureOpcs.@code'], Record ->> '$.Treatment[*].Surgery.ProcedureOpcs[*].@code'], recursive := true) as ProcedureOpcs
    from omop_staging.cosd_staging_901
    where type = 'SK'
)
select distinct
    NhsNumber,
    ProcedureDate,
    ProcedureOpcs
from COSD
where NhsNumber is not null
  and ProcedureOpcs is not null;

Comment or raise an issue for this mapping.

COSD V9 SK Procedure Occurrence Primary Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Will be mapped to procedure_date in OMOP. Currently in string format (CCYY-MM-DD) and will be cast to a date type in a later ETL step. PROCEDURE DATE

with COSD as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        unnest ([[Record ->> '$.Treatment.Surgery.ProcedureDate'], Record ->> '$.Treatment[*].Surgery.ProcedureDate'], recursive := true) as ProcedureDate,
        unnest ([[Record ->> '$.Treatment.Surgery.PrimaryProcedureOpcs.@code'], Record ->> '$.Treatment[*].Surgery.PrimaryProcedureOpcs.@code'], recursive := true) as PrimaryProcedureOpcs
    from omop_staging.cosd_staging_901
    where type = 'SK'
)
select distinct
    NhsNumber,
    ProcedureDate,
    PrimaryProcedureOpcs
from COSD
where NhsNumber is not null
  and PrimaryProcedureOpcs is not null;

Comment or raise an issue for this mapping.

COSD V9 SK Procedure Occurrence Diagnostic Procedure Snomed Ct

Source column DiagnosticProcedureDate. Converts text to dates.

• DiagnosticProcedureDate Procedure date of the diagnostic procedure. Will be mapped to procedure_date in OMOP. Currently in string format (CCYY-MM-DD) and will be cast to a date type in a later ETL step. PROCEDURE DATE (DIAGNOSTIC PROCEDURE)

with COSD as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        unnest ([[Record ->> '$.DiagnosticProcedures.DiagnosticProcedureDate'], Record ->> '$.DiagnosticProcedures[*].DiagnosticProcedureDate'], recursive := true) as DiagnosticProcedureDate,
        unnest ([[Record ->> '$.DiagnosticProcedures.DiagnosticProcedureSnomedCt.@code'], Record ->> '$.DiagnosticProcedures[*].DiagnosticProcedureSnomedCt.@code'], recursive := true) as DiagnosticProcedureSnomedCt
    from omop_staging.cosd_staging_901
    where type = 'SK'
)
select distinct
    NhsNumber,
    DiagnosticProcedureDate,
    DiagnosticProcedureSnomedCt
from COSD
where NhsNumber is not null
  and DiagnosticProcedureSnomedCt is not null;

Comment or raise an issue for this mapping.

COSD V9 SK Procedure Occurrence Diagnostic Procedure Opcs

Source column DiagnosticProcedureDate. Converts text to dates.

• DiagnosticProcedureDate Procedure date of the diagnostic procedure. Will be mapped to procedure_date in OMOP. Currently in string format (CCYY-MM-DD) and will be cast to a date type in a later ETL step. PROCEDURE DATE (DIAGNOSTIC PROCEDURE)

with COSD as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        unnest ([[Record ->> '$.DiagnosticProcedures.DiagnosticProcedureDate'], Record ->> '$.DiagnosticProcedures[*].DiagnosticProcedureDate'], recursive := true) as DiagnosticProcedureDate,
        unnest ([[Record ->> '$.DiagnosticProcedures.DiagnosticProcedureOpcs.@code'], Record ->> '$.DiagnosticProcedures[*].DiagnosticProcedureOpcs.@code'], recursive := true) as DiagnosticProcedureOpcs
    from omop_staging.cosd_staging_901
    where type = 'SK'
)
select distinct
    NhsNumber,
    DiagnosticProcedureDate,
    DiagnosticProcedureOpcs
from COSD
where NhsNumber is not null
  and DiagnosticProcedureOpcs is not null;

Comment or raise an issue for this mapping.

COSD V8 SK Procedure Occurrence Procedure OPCS

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Will be mapped to procedure_date in OMOP. Currently in string format (CCYY-MM-DD) and will be cast to a date type in a later ETL step. PROCEDURE DATE

with COSD as (
    select distinct
        Record ->> '$.Skin.SkinCore.SkinCoreLinkagePatientId.NHSNumber.@extension' as NHSNumber,
        unnest ([[Record ->> '$.Skin.SkinCore.SkinCoreTreatment.SkinCoreSurgeryAndOtherProcedures.ProcedureDate'], Record ->> '$.Skin.SkinCore.SkinCoreTreatment[*].SkinCoreSurgeryAndOtherProcedures.ProcedureDate'], recursive := true) as ProcedureDate,
        unnest ([[Record ->> '$.Skin.SkinCore.SkinCoreTreatment.SkinCoreSurgeryAndOtherProcedures.ProcedureOPCS.@code'], Record ->> '$.Skin.SkinCore.SkinCoreTreatment[*].SkinCoreSurgeryAndOtherProcedures.ProcedureOPCS[*].@code'], recursive := true) as ProcedureOPCS
    from omop_staging.cosd_staging_81
    where type = 'SK'
)
select distinct
    NHSNumber,
    ProcedureDate,
    ProcedureOPCS
from COSD
where NHSNumber is not null
  and ProcedureOPCS is not null;

Comment or raise an issue for this mapping.

COSD V8 SK Procedure Occurrence Primary Procedure OPCS

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Will be mapped to procedure_date in OMOP. Currently in string format (CCYY-MM-DD) and will be cast to a date type in a later ETL step. PROCEDURE DATE

with COSD as (
    select distinct
        Record ->> '$.Skin.SkinCore.SkinCoreLinkagePatientId.NHSNumber.@extension' as NHSNumber,
        unnest ([[Record ->> '$.Skin.SkinCore.SkinCoreTreatment.SkinCoreSurgeryAndOtherProcedures.ProcedureDate'], Record ->> '$.Skin.SkinCore.SkinCoreTreatment[*].SkinCoreSurgeryAndOtherProcedures.ProcedureDate'], recursive := true) as ProcedureDate,
        unnest ([[Record ->> '$.Skin.SkinCore.SkinCoreTreatment.SkinCoreSurgeryAndOtherProcedures.PrimaryProcedureOPCS.@code'], Record ->> '$.Skin.SkinCore.SkinCoreTreatment[*].SkinCoreSurgeryAndOtherProcedures.PrimaryProcedureOPCS.@code'], recursive := true) as PrimaryProcedureOPCS
    from omop_staging.cosd_staging_81
    where type = 'SK'
)
select distinct
    NHSNumber,
    ProcedureDate,
    PrimaryProcedureOPCS
from COSD
where NHSNumber is not null
  and PrimaryProcedureOPCS is not null;

Comment or raise an issue for this mapping.

COSD V9 SA Procedure Occurrence Procedure Opcs Procedure Date

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Same as the ACTIVITY DATE attribute for “Procedure Date”. Will be mapped to procedure_date in the OMOP procedure_occurrence table. Format is CCYY-MM-DD and will need date parsing in a later ETL step. PROCEDURE DATE

with sa as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        unnest ([[Record ->> '$.Treatment.Surgery.ProcedureDate'], Record ->> '$.Treatment[*].Surgery.ProcedureDate'], recursive := true) as ProcedureDate,
        unnest ([[Record ->> '$.Treatment.Surgery.ProcedureOpcs.@code'], Record ->> '$.Treatment[*].Surgery.ProcedureOpcs[*].@code'], recursive := true) as ProcedureOpcs
    from omop_staging.cosd_staging_901
    where type = 'SA'
)
select distinct
    NhsNumber,
    ProcedureDate,
    ProcedureOpcs
from sa
where NhsNumber is not null
  and ProcedureOpcs is not null

Comment or raise an issue for this mapping.

COSD V9 SA Procedure Occurrence Primary Procedure Opcs Procedure Date

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Same as the ACTIVITY DATE attribute for “Procedure Date”. Will be mapped to procedure_date in the OMOP procedure_occurrence table. Format is CCYY-MM-DD and will need date parsing in a later ETL step. PROCEDURE DATE

with sa as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        unnest ([[Record ->> '$.Treatment.Surgery.ProcedureDate'], Record ->> '$.Treatment[*].Surgery.ProcedureDate'], recursive := true) as ProcedureDate,
        unnest ([[Record ->> '$.Treatment.Surgery.PrimaryProcedureOpcs.@code'], Record ->> '$.Treatment[*].Surgery.PrimaryProcedureOpcs.@code'], recursive := true) as PrimaryProcedureOpcs
    from omop_staging.cosd_staging_901
    where type = 'SA'
)
select distinct
    NhsNumber,
    ProcedureDate,
    PrimaryProcedureOpcs
from sa
where NhsNumber is not null
  and PrimaryProcedureOpcs is not null

Comment or raise an issue for this mapping.

COSD V8 SA Procedure Occurrence Procedure OPCS Procedure Date

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Same as the ACTIVITY DATE attribute for “Procedure Date”. Will be mapped to procedure_date in the OMOP procedure_occurrence table. Format is CCYY-MM-DD and will need date parsing in a later ETL step. PROCEDURE DATE

with sa as (
    select distinct
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        unnest ([[Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreTreatment.SarcomaCoreSurgeryAndOtherProcedures.ProcedureDate'], Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreTreatment[*].SarcomaCoreSurgeryAndOtherProcedures.ProcedureDate'], recursive := true) as ProcedureDate,
        unnest ([[Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreTreatment.SarcomaCoreSurgeryAndOtherProcedures.ProcedureOPCS.@code'], Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreTreatment[*].SarcomaCoreSurgeryAndOtherProcedures.ProcedureOPCS[*].@code'], recursive := true) as ProcedureOPCS
    from omop_staging.cosd_staging_81
    where type = 'SA'
)
select distinct
    NhsNumber,
    ProcedureDate,
    ProcedureOPCS
from sa
where NhsNumber is not null
  and ProcedureOPCS is not null

Comment or raise an issue for this mapping.

COSD V8 SA Procedure Occurrence Primary Procedure OPCS Procedure Date

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Same as the ACTIVITY DATE attribute for “Procedure Date”. Will be mapped to procedure_date in the OMOP procedure_occurrence table. Format is CCYY-MM-DD and will need date parsing in a later ETL step. PROCEDURE DATE

with sa as (
    select distinct
        Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        unnest ([[Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreTreatment.SarcomaCoreSurgeryAndOtherProcedures.ProcedureDate'], Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreTreatment[*].SarcomaCoreSurgeryAndOtherProcedures.ProcedureDate'], recursive := true) as ProcedureDate,
        unnest ([[Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreTreatment.SarcomaCoreSurgeryAndOtherProcedures.PrimaryProcedureOPCS.@code'], Record ->> '$.Sarcoma.SarcomaCore.SarcomaCoreTreatment[*].SarcomaCoreSurgeryAndOtherProcedures.PrimaryProcedureOPCS.@code'], recursive := true) as PrimaryProcedureOPCS
    from omop_staging.cosd_staging_81
    where type = 'SA'
)
select distinct
    NhsNumber,
    ProcedureDate,
    PrimaryProcedureOPCS
from sa
where NhsNumber is not null
  and PrimaryProcedureOPCS is not null

Comment or raise an issue for this mapping.

COSD V9 LV Procedure Occurrence Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Same as the ACTIVITY DATE attribute for “Procedure Date”. PROCEDURE DATE

with lv as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.Treatment.Surgery.ProcedureDate' as ProcedureDate,
        unnest(
            [
                [Record ->> '$.Treatment.Surgery.ProcedureOpcs.@code'],
                Record ->> '$.Treatment.Surgery.ProcedureOpcs[*].@code'
            ],
            recursive := true
        ) as ProcedureOpcs
    from omop_staging.cosd_staging_901
    where type = 'LV'
)
select distinct
    NhsNumber,
    ProcedureOpcs,
    ProcedureDate
from lv
where NhsNumber is not null
  and ProcedureOpcs is not null;
	

Comment or raise an issue for this mapping.

COSD V9 LV Procedure Occurrence Primary Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Same as the ACTIVITY DATE attribute for “Procedure Date”. PROCEDURE DATE

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    -- OPCS code identifying the primary procedure carried out
    Record ->> '$.Treatment.Surgery.PrimaryProcedureOpcs.@code' as PrimaryProcedureOpcs,
    -- Date the procedure was performed, currently a string in CCYY-MM-DD format; will be cast to date in a later ETL step
    Record ->> '$.Treatment.Surgery.ProcedureDate' as ProcedureDate
from omop_staging.cosd_staging_901
where type = 'LV'
  and NhsNumber is not null
  and PrimaryProcedureOpcs is not null;
	

Comment or raise an issue for this mapping.

COSD V8 LV Procedure Occurrence Procedure OPCS

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Same as the ACTIVITY DATE attribute for “Procedure Date”. PROCEDURE DATE

select distinct
    Record ->> '$.Liver.LiverCore.LiverCoreLinkagePatientId.NHSNumber.@extension' as NHSNumber,
    Record ->> '$.Liver.LiverCore.LiverCoreTreatment.LiverCoreSurgeryAndOtherProcedures.ProcedureOPCS.@code' as ProcedureOPCS,
    Record ->> '$.Liver.LiverCore.LiverCoreTreatment.LiverCoreSurgeryAndOtherProcedures.ProcedureDate' as ProcedureDate
from omop_staging.cosd_staging_81
where type = 'LV'
  and NHSNumber is not null
  and ProcedureOPCS is not null;
	

Comment or raise an issue for this mapping.

COSD V8 LV Procedure Occurrence Primary Procedure OPCS

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Same as the ACTIVITY DATE attribute for “Procedure Date”. PROCEDURE DATE

select distinct
    Record ->> '$.Liver.LiverCore.LiverCoreLinkagePatientId.NHSNumber.@extension' as NHSNumber,
    Record ->> '$.Liver.LiverCore.LiverCoreTreatment.LiverCoreSurgeryAndOtherProcedures.PrimaryProcedureOPCS.@code' as PrimaryProcedureOPCS,
    Record ->> '$.Liver.LiverCore.LiverCoreTreatment.LiverCoreSurgeryAndOtherProcedures.ProcedureDate' as ProcedureDate
from omop_staging.cosd_staging_81
where type = 'LV'
  and NHSNumber is not null
  and PrimaryProcedureOPCS is not null;
	

Comment or raise an issue for this mapping.

CosdV9LungProcedureOccurrenceRelapseMethodOfDetection

• Value copied from Date

• Date Procedure date CANCER RECURRENCE OR PROGRESSION - DATE DETECTED

with LU as (
    select
        Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
        Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeenCancerSpecialist' as DateFirstSeenCancerSpecialist,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage' as StageDateFinalPretreatmentStage,
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage' as StageDateIntegratedStage,
        Record ->> '$.Treatment.TreatmentStartDateCancer' as TreatmentStartDateCancer,
        Record ->> '$.Treatment.Surgery.ProcedureDate' as ProcedureDate,
        unnest ([[Record ->> '$.NonPrimaryPathway.Recurrence.Relapse-MethodOfDetection.@code'], Record ->> '$.NonPrimaryPathway.Recurrence.Relapse-MethodOfDetection[*].@code'], recursive := true) as RelapseMethodOfDetection,
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber
    from omop_staging.cosd_staging_901
    where type = 'LU'
)
select
    distinct
        RelapseMethodOfDetection,
        NhsNumber,
        least(
            cast(DateFirstSeen as date),
            cast(DateFirstSeenCancerSpecialist as date),
            cast(DateOfPrimaryDiagnosisClinicallyAgreed as date),
            cast(StageDateFinalPretreatmentStage as date),
            cast(StageDateIntegratedStage as date),
            cast(TreatmentStartDateCancer as date),
            cast(ProcedureDate as date)
        ) as Date
from LU o
where o.RelapseMethodOfDetection is not null
  and not (
        DateFirstSeen is null and
        DateFirstSeenCancerSpecialist is null and
        DateOfPrimaryDiagnosisClinicallyAgreed is null and
        StageDateFinalPretreatmentStage is null and
        StageDateIntegratedStage is null and
        TreatmentStartDateCancer is null and
        ProcedureDate is null
    )

Comment or raise an issue for this mapping.

Cosd V9 Lung Procedure Occurrence Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate The date, month, year and century, or any combination of these elements, that is of relevance to an ACTIVITY. PROCEDURE DATE

with lung as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        Record ->> '$.Treatment.Surgery.ProcedureDate' as ProcedureDate,
        unnest ([[Record ->> '$.Treatment.Surgery.ProcedureOpcs.@code'], Record ->> '$.Treatment.Surgery.ProcedureOpcs[*].@code'], recursive := true) as ProcedureOpcsCode
    from omop_staging.cosd_staging_901
    where type = 'LU'
)
select distinct
    NhsNumber,
    ProcedureDate,
    ProcedureOpcsCode
from lung
where ProcedureOpcsCode is not null
and NhsNumber is not null
and ProcedureDate is not null;
	

Comment or raise an issue for this mapping.

Cosd V9 Lung Procedure Occurrence Primary Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate The date, month, year and century, or any combination of these elements, that is of relevance to an ACTIVITY. PROCEDURE DATE

select 
  distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.Treatment.Surgery.ProcedureDate' as ProcedureDate,
    Record ->> '$.Treatment.Surgery.PrimaryProcedureOpcs.@code' as PrimaryProcedureOpcs
from omop_staging.cosd_staging_901
where type = 'LU'
  and NhsNumber is not null
  and ProcedureDate is not null
  and PrimaryProcedureOpcs is not null;
	

Comment or raise an issue for this mapping.

CosdV8LungProcedureOccurrenceRelapseMethodOfDetection

• Value copied from Date

• Date Procedure date DATE FIRST SEEN, DATE FIRST SEEN (CANCER SPECIALIST), DIAGNOSIS DATE, TNM STAGE GROUPING DATE (INTEGRATED), TNM STAGE GROUPING DATE (FINAL PRETREATMENT), TREATMENT START DATE (CANCER), PROCEDURE DATE

with LU as (
    select 
        Record ->> '$.Lung.LungCore.LungCoreReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
        Record ->> '$.Lung.LungCore.LungCoreReferralAndFirstStageOfPatientPathway.SpecialistDateFirstSeen' as SpecialistDateFirstSeen,
        Record ->> '$.Lung.LungCore.LungCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Lung.LungCore.LungCoreStaging.IntegratedStageTNMStageGroupingDate' as IntegratedStageTNMStageGroupingDate,
        Record ->> '$.Lung.LungCore.LungCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as FinalPreTreatmentTNMStageGroupingDate,
        unnest ([[Record ->> '$.Lung.LungCore.LungCoreTreatment.CancerTreatmentStartDate'], Record ->> '$.Lung.LungCore.LungCoreTreatment[*].CancerTreatmentStartDate'], recursive := true) as CancerTreatmentStartDate,
        Record ->> '$.Lung.LungCore.LungCoreTreatment.LungCoreSurgeryAndOtherProcedures.ProcedureDate' as ProcedureDate,
        Record ->> '$.Lung.LungCore.LungCoreNonPrimaryCancerPathwayALLAMLAndMPAL.RelapseMethodDetectionType.@code' as RelapseMethodDetectionType,
        Record ->> '$.Lung.LungCore.LungCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber
    from omop_staging.cosd_staging_81
    where Type = 'LU'
)
select
      distinct
          RelapseMethodDetectionType,
          NhsNumber,
          least(
                cast (DateFirstSeen as date),
                cast (SpecialistDateFirstSeen as date),
                cast (ClinicalDateCancerDiagnosis as date),
                cast (IntegratedStageTNMStageGroupingDate as date),
                cast (FinalPreTreatmentTNMStageGroupingDate as date),
                cast (CancerTreatmentStartDate as date),
                cast (ProcedureDate as date)
              ) as Date
from LU o
where o.RelapseMethodDetectionType is not null
  and not (
    DateFirstSeen is null and
    SpecialistDateFirstSeen is null and
    ClinicalDateCancerDiagnosis is null and
    IntegratedStageTNMStageGroupingDate is null and
    FinalPreTreatmentTNMStageGroupingDate is null and
    CancerTreatmentStartDate is null and
    ProcedureDate is null
    )

Comment or raise an issue for this mapping.

Cosd V8 Lung Procedure Occurrence Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate The date, month, year and century, or any combination of these elements, that is of relevance to an ACTIVITY. PROCEDURE DATE

with lung as (
  select 
    Record ->> '$.Lung.LungCore.LungCoreLinkagePatientId.NHSNumber.@extension' as NHSNumber,
    Record ->> '$.Lung.LungCore.LungCoreTreatment.LungCoreSurgeryAndOtherProcedures.ProcedureDate' as ProcedureDate,
    unnest ([[Record ->> '$.Lung.LungCore.LungCoreTreatment.LungCoreSurgeryAndOtherProcedures.ProcedureOPCS.@code'], Record ->> '$.Lung.LungCore.LungCoreTreatment.LungCoreSurgeryAndOtherProcedures.ProcedureOPCS[*].@code'], recursive := true) as ProcedureOpcsCode
    from omop_staging.cosd_staging_81
    where Type = 'LU'
)
select
  distinct
		NhsNumber,
		ProcedureDate,
		ProcedureOpcsCode
from lung
where ProcedureOpcsCode is not null
and NhsNumber is not null
and ProcedureDate is not null;
	

Comment or raise an issue for this mapping.

COSD V8 Lung Procedure Occurrence Primary Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate The date on which the procedure was performed PROCEDURE DATE

with Lung as (
  select 
    Record ->> '$.Lung.LungCore.LungCoreTreatment.LungCoreSurgeryAndOtherProcedures.ProcedureDate' as ProcedureDate,
    Record ->> '$.Lung.LungCore.LungCoreLinkagePatientId.NHSNumber.@extension' as NHSNumber,
    Record ->> '$.Lung.LungCore.LungCoreTreatment.LungCoreSurgeryAndOtherProcedures.PrimaryProcedureOPCS.@code' as PrimaryProcedureOPCS
  from omop_staging.cosd_staging_81
  where Type = 'LU'
)
select
      distinct
          ProcedureDate,
          NhsNumber,
          PrimaryProcedureOPCS
from Lung l
where l.ProcedureDate is not null
and l.PrimaryProcedureOPCS is not null
and l.NhsNumber is not null;
	

Comment or raise an issue for this mapping.

COSD V9 HA Procedure Occurrence Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Same as the ACTIVITY DATE attribute for “Procedure Date”. PROCEDURE DATE

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.Treatment.Surgery.ProcedureDate' as ProcedureDate,
    Record ->> '$.Treatment.Surgery.ProcedureOpcs.@code' as ProcedureOpcs
from omop_staging.cosd_staging_901
where type = 'HA'
  and NhsNumber is not null
  and ProcedureOpcs is not null;

Comment or raise an issue for this mapping.

COSD V9 HA Procedure Occurrence Primary Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Same as the ACTIVITY DATE attribute for “Procedure Date”. PROCEDURE DATE

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.Treatment.Surgery.ProcedureDate' as ProcedureDate,
    Record ->> '$.Treatment.Surgery.PrimaryProcedureOpcs.@code' as PrimaryProcedureOpcs
from omop_staging.cosd_staging_901
where type = 'HA'
  and NhsNumber is not null
  and PrimaryProcedureOpcs is not null;

Comment or raise an issue for this mapping.

COSD V9 HA Procedure Occurrence Diagnostic Procedure Snomed Ct

Source column DiagnosticProcedureDate. Converts text to dates.

• DiagnosticProcedureDate Procedure date of the diagnostic procedure. Same as the ACTIVITY DATE attribute for this diagnostic procedure. PROCEDURE DATE (DIAGNOSTIC PROCEDURE)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.DiagnosticProcedures.DiagnosticProcedureDate' as DiagnosticProcedureDate,
    Record ->> '$.DiagnosticProcedures.DiagnosticProcedureSnomedCt.@code' as DiagnosticProcedureSnomedCt
from omop_staging.cosd_staging_901
where type = 'HA'
  and NhsNumber is not null
  and DiagnosticProcedureSnomedCt is not null;

Comment or raise an issue for this mapping.

COSD V9 HA Procedure Occurrence Diagnostic Procedure Opcs

Source column DiagnosticProcedureDate. Converts text to dates.

• DiagnosticProcedureDate Procedure date of the diagnostic procedure. Same as the ACTIVITY DATE attribute for this diagnostic procedure. PROCEDURE DATE (DIAGNOSTIC PROCEDURE)

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.DiagnosticProcedures.DiagnosticProcedureDate' as DiagnosticProcedureDate,
    Record ->> '$.DiagnosticProcedures.DiagnosticProcedureOpcs.@code' as DiagnosticProcedureOpcs
from omop_staging.cosd_staging_901
where type = 'HA'
  and NhsNumber is not null
  and DiagnosticProcedureOpcs is not null;

Comment or raise an issue for this mapping.

COSD V901 CT Procedure Occurrence Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Same as the ACTIVITY DATE attribute for “Procedure Date”. PROCEDURE DATE

with ct as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,

        unnest ([[Record ->> '$.Treatment.Surgery.ProcedureDate'], Record ->> '$.Treatment[*].Surgery.ProcedureDate'], recursive := true) as ProcedureDate,

        unnest ([[Record ->> '$.Treatment.Surgery.ProcedureOpcs.@code'], Record ->> '$.Treatment[*].Surgery.ProcedureOpcs[*].@code'], recursive := true) as ProcedureOpcs
    from omop_staging.cosd_staging_901
    where type = 'CT'
)
select distinct
    NhsNumber,
    ProcedureDate,
    ProcedureOpcs
from ct
where NhsNumber is not null
  and ProcedureOpcs is not null;

Comment or raise an issue for this mapping.

COSD V901 CT Procedure Occurrence Primary Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Same as the ACTIVITY DATE attribute for “Procedure Date”. PROCEDURE DATE

with ct as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,

        unnest ([[Record ->> '$.Treatment.Surgery.ProcedureDate'], Record ->> '$.Treatment[*].Surgery.ProcedureDate'], recursive := true) as ProcedureDate,

        unnest ([[Record ->> '$.Treatment.Surgery.PrimaryProcedureOpcs.@code'], Record ->> '$.Treatment[*].Surgery.PrimaryProcedureOpcs.@code'], recursive := true) as PrimaryProcedureOpcs
    from omop_staging.cosd_staging_901
    where type = 'CT'
)
select distinct
    NhsNumber,
    ProcedureDate,
    PrimaryProcedureOpcs
from ct
where NhsNumber is not null
  and PrimaryProcedureOpcs is not null;

Comment or raise an issue for this mapping.

COSD V8 CT Procedure Occurrence Primary Procedure OPCS

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Same as the ACTIVITY DATE attribute for “Procedure Date”. PROCEDURE DATE

with ct as (
    select distinct
        Record ->> '$.CTYA.CTYACore.CTYACoreLinkagePatientId.NHSNumber.@extension' as NHSNumber,

        unnest ([[Record ->> '$.CTYA.CTYACore.CTYACoreTreatment.CTYACoreSurgeryAndOtherProcedures.ProcedureDate'], Record ->> '$.CTYA.CTYACore.CTYACoreTreatment[*].CTYACoreSurgeryAndOtherProcedures.ProcedureDate'], recursive := true) as ProcedureDate,

        unnest ([[Record ->> '$.CTYA.CTYACore.CTYACoreTreatment.CTYACoreSurgeryAndOtherProcedures.PrimaryProcedureOPCS.@code'], Record ->> '$.CTYA.CTYACore.CTYACoreTreatment[*].CTYACoreSurgeryAndOtherProcedures.PrimaryProcedureOPCS.@code'], recursive := true) as PrimaryProcedureOPCS
    from omop_staging.cosd_staging_81
    where type = 'CT'
)
select distinct
    NHSNumber,
    ProcedureDate,
    PrimaryProcedureOPCS
from ct
where NHSNumber is not null
  and PrimaryProcedureOPCS is not null;

Comment or raise an issue for this mapping.

COSD V9 CO Procedure Occurrence Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date, in CCYY-MM-DD format. Will be transformed to a date type and mapped to procedure_date in the procedure_occurrence table. Null values indicate the procedure date was not recorded. PROCEDURE DATE

with co as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        unnest ([[Record ->> '$.Treatment.Surgery.ProcedureOpcs.@code'], Record ->> '$.Treatment[*].Surgery.ProcedureOpcs[*].@code'], recursive := true) as ProcedureOpcs,
        unnest ([[Record ->> '$.Treatment.Surgery.ProcedureDate'], Record ->> '$.Treatment[*].Surgery.ProcedureDate'], recursive := true) as ProcedureDate
    from omop_staging.cosd_staging_901
    where type = 'CO'
)
select distinct
    NhsNumber,
    ProcedureOpcs,
    ProcedureDate
from co
where NhsNumber is not null
  and ProcedureOpcs is not null;

Comment or raise an issue for this mapping.

COSD V9 CO Procedure Occurrence Primary Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date, in CCYY-MM-DD format. Will be transformed to a date type and mapped to procedure_date in the procedure_occurrence table. Null values indicate the procedure date was not recorded. PROCEDURE DATE

with co as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        unnest ([[Record ->> '$.Treatment.Surgery.PrimaryProcedureOpcs.@code'], Record ->> '$.Treatment[*].Surgery.PrimaryProcedureOpcs.@code'], recursive := true) as PrimaryProcedureOpcs,
        unnest ([[Record ->> '$.Treatment.Surgery.ProcedureDate'], Record ->> '$.Treatment[*].Surgery.ProcedureDate'], recursive := true) as ProcedureDate
    from omop_staging.cosd_staging_901
    where type = 'CO'
)
select distinct
    NhsNumber,
    PrimaryProcedureOpcs,
    ProcedureDate
from co
where NhsNumber is not null
  and PrimaryProcedureOpcs is not null;

Comment or raise an issue for this mapping.

COSD V8 CO Procedure Occurrence Procedure OPCS

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date, in CCYY-MM-DD format. Will be transformed to a date type and mapped to procedure_date in the procedure_occurrence table. Null values indicate the procedure date was not recorded. PROCEDURE DATE

with co as (
    select distinct
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        unnest ([[Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreTreatment.ColorectalCoreSurgeryAndOtherProcedures.ProcedureOPCS.@code'], Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreTreatment[*].ColorectalCoreSurgeryAndOtherProcedures.ProcedureOPCS[*].@code'], recursive := true) as ProcedureOPCS,
        unnest ([[Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreTreatment.ColorectalCoreSurgeryAndOtherProcedures.ProcedureDate'], Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreTreatment[*].ColorectalCoreSurgeryAndOtherProcedures.ProcedureDate'], recursive := true) as ProcedureDate
    from omop_staging.cosd_staging_81
    where type = 'CO'
)
select distinct
    NhsNumber,
    ProcedureOPCS,
    ProcedureDate
from co
where NhsNumber is not null
  and ProcedureOPCS is not null;

Comment or raise an issue for this mapping.

COSD V8 CO Procedure Occurrence Primary Procedure OPCS

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date, in CCYY-MM-DD format. Will be transformed to a date type and mapped to procedure_date in the procedure_occurrence table. Null values indicate the procedure date was not recorded. PROCEDURE DATE

with co as (
    select distinct
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
        unnest ([[Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreTreatment.ColorectalCoreSurgeryAndOtherProcedures.PrimaryProcedureOPCS.@code'], Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreTreatment[*].ColorectalCoreSurgeryAndOtherProcedures.PrimaryProcedureOPCS.@code'], recursive := true) as PrimaryProcedureOPCS,
        unnest ([[Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreTreatment.ColorectalCoreSurgeryAndOtherProcedures.ProcedureDate'], Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreTreatment[*].ColorectalCoreSurgeryAndOtherProcedures.ProcedureDate'], recursive := true) as ProcedureDate
    from omop_staging.cosd_staging_81
    where type = 'CO'
)
select distinct
    NhsNumber,
    PrimaryProcedureOPCS,
    ProcedureDate
from co
where NhsNumber is not null
  and PrimaryProcedureOPCS is not null;

Comment or raise an issue for this mapping.

Cosd V9 Procedure Occurrence Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate The date, month, year and century, or any combination of these elements, that is of relevance to an ACTIVITY. PROCEDURE DATE

with CO as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        coalesce(Record ->> '$.Treatment[0].Surgery.ProcedureDate', Record ->> '$.Treatment.Surgery.ProcedureDate') as ProcedureDate,
        unnest(
            [
                [ Record ->> '$.Treatment.Surgery.ProcedureOpcs.@code' ],
                Record ->> '$.Treatment.Surgery.ProcedureOpcs[*].@code'
            ],
            recursive := true
        ) as ProcedureOpcsCode
    from omop_staging.cosd_staging_901
    where type = 'CO'
)
select distinct
    NhsNumber,
    ProcedureDate,
    ProcedureOpcsCode
from CO
where ProcedureOpcsCode is not null;
	

Comment or raise an issue for this mapping.

Cosd V9 Procedure Occurrence Primary Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate The date, month, year and century, or any combination of these elements, that is of relevance to an ACTIVITY. PROCEDURE DATE

select 
  distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    coalesce(Record ->> '$.Treatment[0].Surgery.ProcedureDate', Record ->> '$.Treatment.Surgery.ProcedureDate') as ProcedureDate,
    coalesce(Record ->> '$.Treatment[0].Surgery.PrimaryProcedureOpcs.@code', Record ->> '$.Treatment.Surgery.PrimaryProcedureOpcs.@code') as PrimaryProcedureOpcs
from omop_staging.cosd_staging_901
where type = 'CO'
  and ProcedureDate is not null
  and PrimaryProcedureOpcs is not null;
	

Comment or raise an issue for this mapping.

Cosd V8 Procedure Occurrence Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate The date, month, year and century, or any combination of these elements, that is of relevance to an ACTIVITY. PROCEDURE DATE

with co as (
  select 
    Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreTreatment.ColorectalCoreSurgeryAndOtherProcedures.ProcedureDate' as ProcedureDate,
    unnest(
      [
        [
          Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreTreatment.ColorectalCoreSurgeryAndOtherProcedures.ProcedureOPCS.@code'
        ], 
        Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreTreatment.ColorectalCoreSurgeryAndOtherProcedures.ProcedureOPCS[*].@code',
      ], recursive := true
    ) as ProcedureOpcsCode
    from omop_staging.cosd_staging_81
    where Type = 'CO'
)
select
  distinct
		NhsNumber,
		ProcedureDate,
		ProcedureOpcsCode
from co
where co.ProcedureOpcsCode is not null;
	

Comment or raise an issue for this mapping.

Cosd V8 Procedure Occurrence Primary Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate The date, month, year and century, or any combination of these elements, that is of relevance to an ACTIVITY. PROCEDURE DATE

with CO as (
  select 
    Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreTreatment.ColorectalCoreSurgeryAndOtherProcedures.ProcedureDate' as ProcedureDate,
    Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.Colorectal.ColorectalCore.ColorectalCoreTreatment.ColorectalCoreSurgeryAndOtherProcedures.PrimaryProcedureOPCS.@code' as PrimaryProcedureOpcs
  from omop_staging.cosd_staging_81
  where Type = 'CO'
)
select
      distinct
          ProcedureDate,
          NhsNumber,
          PrimaryProcedureOpcs
from CO o
where o.ProcedureDate is not null and o.PrimaryProcedureOpcs is not null;

Comment or raise an issue for this mapping.

COSD V9 Breast Procedure Occurrence Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate The date, month, year and century, or any combination of these elements, that is of relevance to an ACTIVITY. PROCEDURE DATE

with BR as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        coalesce(Record ->> '$.Treatment[0].Surgery.ProcedureDate', Record ->> '$.Treatment.Surgery.ProcedureDate') as ProcedureDate,
        unnest(
            [
                [ Record ->> '$.Treatment.Surgery.ProcedureOpcs.@code' ],
                Record ->> '$.Treatment.Surgery.ProcedureOpcs[*].@code'
            ],
            recursive := true
        ) as ProcedureOpcsCode
    from omop_staging.cosd_staging_901
    where type = 'BR'
)
select distinct
    NhsNumber,
    ProcedureDate,
    ProcedureOpcsCode
from BR
where ProcedureOpcsCode is not null;
	

Comment or raise an issue for this mapping.

COSD V9 Breast Procedure Occurrence Primary Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate The date, month, year and century, or any combination of these elements, that is of relevance to an ACTIVITY. PROCEDURE DATE

with BR as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        coalesce(Record ->> '$.Treatment[0].Surgery.ProcedureDate', Record ->> '$.Treatment.Surgery.ProcedureDate') as ProcedureDate,
        coalesce(Record ->> '$.Treatment[0].Surgery.PrimaryProcedureOpcs.@code', Record ->> '$.Treatment.Surgery.PrimaryProcedureOpcs.@code') as PrimaryProcedureOpcs
    from omop_staging.cosd_staging_901
    where type = 'BR'
)
select
    NhsNumber,
    ProcedureDate,
    PrimaryProcedureOpcs
from BR
where ProcedureDate is not null
  and PrimaryProcedureOpcs is not null;
	

Comment or raise an issue for this mapping.

COSD V8 Breast Procedure Occurrence Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate The date, month, year and century, or any combination of these elements, that is of relevance to an ACTIVITY. PROCEDURE DATE

with br as (
  select 
    Record ->> '$.Breast.BreastCore.BreastCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.Breast.BreastCore.BreastCoreTreatment.BreastCoreSurgeryAndOtherProcedures.ProcedureDate' as ProcedureDate,
    unnest(
      [
        [
          Record ->> '$.Breast.BreastCore.BreastCoreTreatment.BreastCoreSurgeryAndOtherProcedures.ProcedureOPCS.@code'
        ], 
        Record ->> '$.Breast.BreastCore.BreastCoreTreatment.BreastCoreSurgeryAndOtherProcedures.ProcedureOPCS[*].@code'
      ], recursive := true
    ) as ProcedureOpcsCode
    from omop_staging.cosd_staging_81
    where Type = 'BR'
)
select
  distinct
        NhsNumber,
        ProcedureDate,
        ProcedureOpcsCode
from br
where br.ProcedureOpcsCode is not null;
--no rows in ci
	

Comment or raise an issue for this mapping.

COSD V8 Breast Procedure Occurrence Primary Procedure Opcs

Source column ProcedureDate. Converts text to dates.

• ProcedureDate The date, month, year and century, or any combination of these elements, that is of relevance to an ACTIVITY. PROCEDURE DATE

with BR as (
  select
    Record ->> '$.Breast.BreastCore.BreastCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber,
    Record ->> '$.Breast.BreastCore.BreastCoreTreatment.BreastCoreSurgeryAndOtherProcedures.ProcedureDate' as ProcedureDate,
    Record ->> '$.Breast.BreastCore.BreastCoreTreatment.BreastCoreSurgeryAndOtherProcedures.PrimaryProcedureOPCS.@code' as PrimaryProcedureOpcs
  from omop_staging.cosd_staging_81
  where Type = 'BR'
)
select
      distinct
          NhsNumber,
          ProcedureDate,
          PrimaryProcedureOpcs
from BR
where ProcedureDate is not null and PrimaryProcedureOpcs is not null;
--no rows in ci
	

Comment or raise an issue for this mapping.

COSD V9 BA Procedure Occurrence Procedure Opcs Procedure Date

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Extracted as a string in CCYY-MM-DD format and will be cast to a date type in a later ETL step to populate procedure_date. PROCEDURE DATE

with ba as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        unnest (
            [
                [Record ->> '$.Treatment.Surgery.ProcedureDate'],
                Record ->> '$.Treatment[*].Surgery.ProcedureDate'
            ],
            recursive := true
        ) as ProcedureDate,
        unnest (
            [
                [Record ->> '$.Treatment.Surgery.ProcedureOpcs.@code'],
                Record ->> '$.Treatment[*].Surgery.ProcedureOpcs[*].@code'
            ],
            recursive := true
        ) as ProcedureOpcs
    from omop_staging.cosd_staging_901
    where type = 'BA'
)
select distinct
    NhsNumber,
    ProcedureDate,
    ProcedureOpcs
from ba
where NhsNumber is not null
  and ProcedureOpcs is not null;

Comment or raise an issue for this mapping.

COSD V9 BA Procedure Occurrence Primary Procedure Opcs Procedure Date

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Extracted as a string in CCYY-MM-DD format and will be cast to a date type in a later ETL step to populate procedure_date. PROCEDURE DATE

with ba as (
    select distinct
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
        unnest (
            [
                [Record ->> '$.Treatment.Surgery.ProcedureDate'],
                Record ->> '$.Treatment[*].Surgery.ProcedureDate'
            ],
            recursive := true
        ) as ProcedureDate,
        unnest (
            [
                [Record ->> '$.Treatment.Surgery.PrimaryProcedureOpcs.@code'],
                Record ->> '$.Treatment[*].Surgery.PrimaryProcedureOpcs.@code'
            ],
            recursive := true
        ) as PrimaryProcedureOpcs
    from omop_staging.cosd_staging_901
    where type = 'BA'
)
select distinct
    NhsNumber,
    ProcedureDate,
    PrimaryProcedureOpcs
from ba
where NhsNumber is not null
  and PrimaryProcedureOpcs is not null;

Comment or raise an issue for this mapping.

COSD V9 BA Procedure Occurrence Biopsy Type Procedure Date

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Extracted as a string in CCYY-MM-DD format and will be cast to a date type in a later ETL step to populate procedure_date. Uses scalar path aligned with BiopsyType cardinality. PROCEDURE DATE

select distinct
    Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber,
    Record ->> '$.Treatment.Surgery.ProcedureDate' as ProcedureDate,
    Record ->> '$.Treatment.Surgery.SurgeryCNS.BiopsyType.@code' as BiopsyType
from omop_staging.cosd_staging_901
where type = 'BA'
  and NhsNumber is not null
  and BiopsyType is not null;

Comment or raise an issue for this mapping.

COSD V8 BA Procedure Occurrence Primary Procedure OPCS Procedure Date

Source column ProcedureDate. Converts text to dates.

• ProcedureDate Date relevant to the activity for the procedure date. Extracted as a string in CCYY-MM-DD format and will be cast to a date type in a later ETL step to populate procedure_date. PROCEDURE DATE

with ba as (
    select distinct
        Record ->> '$.CNS.CNSCore.CNSCoreLinkagePatientId.NHSNumber.@extension' as NHSNumber,
        unnest (
            [
                [Record ->> '$.CNS.CNSCore.CNSCoreTreatment.CNSCoreSurgeryAndOtherProcedures.ProcedureDate'],
                Record ->> '$.CNS.CNSCore.CNSCoreTreatment[*].CNSCoreSurgeryAndOtherProcedures.ProcedureDate'
            ],
            recursive := true
        ) as ProcedureDate,
        unnest (
            [
                [Record ->> '$.CNS.CNSCore.CNSCoreTreatment.CNSCoreSurgeryAndOtherProcedures.PrimaryProcedureOPCS.@code'],
                Record ->> '$.CNS.CNSCore.CNSCoreTreatment[*].CNSCoreSurgeryAndOtherProcedures.PrimaryProcedureOPCS.@code'
            ],
            recursive := true
        ) as PrimaryProcedureOPCS
    from omop_staging.cosd_staging_81
    where type = 'BA'
)
select distinct
    NHSNumber,
    ProcedureDate,
    PrimaryProcedureOPCS
from ba
where NHSNumber is not null
  and PrimaryProcedureOPCS is not null;

Comment or raise an issue for this mapping.