observation_source_value

SUS Outpatient Procedure Observation

• Value copied from PrimaryProcedure

• PrimaryProcedure OPCS-4 Procedure code. PROCEDURE (OPCS)

with results as
(
	select
		distinct
			op.GeneratedRecordIdentifier,
			op.NHSNumber,
			op.AppointmentDate,
			op.AppointmentTime,
			p.ProcedureOPCS as PrimaryProcedure
	from omop_staging.sus_OP op
		inner join omop_staging.sus_OP_OPCSProcedure p
		on op.MessageId = p.MessageId
	where NHSNumber is not null
		and AttendedorDidNotAttend in ('5','6')
)
select *
from results
order by 
	GeneratedRecordIdentifier,
	NHSNumber,
	AppointmentDate, 
	AppointmentTime,
	PrimaryProcedure
	

Comment or raise an issue for this mapping.

Sus OP ICDDiagnosis table

• Value copied from DiagnosisICD

• DiagnosisICD ICD10 diagnosis code PRIMARY DIAGNOSIS (ICD)

select
    distinct
        d.DiagnosisICD,
        op.GeneratedRecordIdentifier,
        op.NHSNumber,
        op.CDSActivityDate
from omop_staging.sus_OP_ICDDiagnosis d
    inner join omop_staging.sus_OP op
        on d.MessageId = op.MessageId
where op.NHSNumber is not null
	and AttendedorDidNotAttend in ('5','6')
	

Comment or raise an issue for this mapping.

Sus CCMDS High Cost Drugs

• Value copied from ObservationSourceValue

• ObservationSourceValue High cost drugs. HIGH COST DRUGS (OPCS)

		select distinct
			apc.NHSNumber,
			apc.HospitalProviderSpellNumber,
			cc.CriticalCareStartDate as ObservationDate,
			coalesce(cc.CriticalCareStartTime, '00:00:00') as ObservationDateTime,
			d.CriticalCareHighCostDrugs as ObservationSourceValue
		from omop_staging.sus_CCMDS_CriticalCareHighCostDrugs d
		inner join omop_staging.sus_CCMDS cc on d.MessageId = cc.MessageId
		inner join omop_staging.sus_APC apc on cc.GeneratedRecordID = apc.GeneratedRecordIdentifier
		where apc.NHSNumber is not null
	

Comment or raise an issue for this mapping.

SUS APC Procedure Occurrence

• Value copied from PrimaryProcedure

• PrimaryProcedure OPCS-4 Procedure code. PROCEDURE (OPCS)

select
	distinct
		apc.GeneratedRecordIdentifier,
		apc.NHSNumber,
		p.ProcedureDateOPCS as PrimaryProcedureDate,
		p.ProcedureOPCS as PrimaryProcedure
from omop_staging.sus_APC apc
	inner join omop_staging.sus_OPCSProcedure p
		on apc.MessageId = p.MessageId
where NHSNumber is not null
order by
	apc.GeneratedRecordIdentifier,
	apc.NHSNumber,
	p.ProcedureDateOPCS,
	p.ProcedureOPCS
	

Comment or raise an issue for this mapping.

Sus APC Diagnosis Table

• Value copied from DiagnosisICD

• DiagnosisICD ICD10 diagnosis code PRIMARY DIAGNOSIS (ICD)

select
    distinct
        d.DiagnosisICD,
        apc.GeneratedRecordIdentifier,
        apc.NHSNumber,
        apc.CDSActivityDate
from omop_staging.sus_ICDDiagnosis d
    inner join omop_staging.sus_APC apc
        on d.MessageId = apc.MessageId
where apc.NHSNumber is not null
order by
	d.DiagnosisICD,
    apc.GeneratedRecordIdentifier,
    apc.NHSNumber,
    apc.CDSActivityDate
	

Comment or raise an issue for this mapping.

SACT Clinical Trial

• Value copied from Source_value

• Source_value Source value for the Systemic Anti-Cancer Therapy Data Set, CLINICAL TRIAL INDICATOR identifies if a PATIENT is currently in an active Systemic Anti-Cancer Therapy CLINICAL TRIAL CLINICAL TRIAL INDICATOR

		select
			distinct
  			replace(NHS_Number, ' ', '') as NHSNumber,
      		Clinical_Trial,
			Case 
				When Clinical_Trial = 1 then concat(Clinical_Trial, ' - PATIENT is taking part in a CLINICAL TRIAL')
			else '' end as Source_Value,
		  	Administration_Date
		from omop_staging.sact_staging
  		where Clinical_Trial = '1'
	

Comment or raise an issue for this mapping.

Oxford Lab General Comment Observation

• Value copied from EVENT

• EVENT Lab test event EVENT

select
    NHS_NUMBER,
    EVENT,
    EVENT_START_DT_TM,
    RESULT_VALUE
from ##duckdb_source##
where lower(EVENT) like '%comment%'

Comment or raise an issue for this mapping.